Sphingomonas sp. Root710

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingomonadaceae

Genus

Sphingomonas

Description

Sphingomonas sp. Root710 is a rod-shaped bacterium that exhibits the presence of flagella, which likely contributes to its motility in various environments. This species is characterized by a single replicon, indicating a streamlined genetic structure, which may influence its adaptability and efficiency in nutrient utilization. The accession number for Sphingomonas sp. Root710 is LMIB00000000.1, which provides a reference point for genomic studies and further characterization of this microorganism. As part of the Sphingomonadaceae family, Sphingomonas species are known for their ability to degrade a variety of organic compounds, including polycyclic aromatic hydrocarbons. This trait suggests that Sphingomonas sp. Root710 may play a significant role in bioremediation processes, particularly in contaminated environments where such compounds are prevalent. In an ecological context, the presence of flagella in Sphingomonas sp. Root710 may enhance its ability to colonize diverse substrates, facilitating its role in nutrient cycling and the decomposition of organic material. The adaptability and metabolic versatility of this bacterium underscore its potential importance in environmental microbiology and ecological health.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingomonadaceae
GenusSphingomonas
SpeciesSphingomonas sp. Root710
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Sphingomonas sp. Root710
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingomonas sp. Root710 contig_9, whole genome shotgun sequence.

Gene Summary

Adenine Count

850122 bp

Thymine Count

845879 bp

Guanine Count

1530473 bp

Cytosine Count

1545664 bp

Genome Length

4772303 bp

Protein-coding Genes

4422 genes

Non-Coding Genes

52 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
type ii citrate synthaseASE00_18325O33915Positive4087723 - 408900647268.7
histidine kinaseASE00_18330Q03228Negative4089335 - 409068748425.1
hypothetical proteinASE00_18335Not AvailableNegative4090684 - 409181140900.0
hypothetical proteinASE00_18340Not AvailableNegative4091854 - 409307742846.9
hypothetical proteinASE00_18345Not AvailableNegative4093218 - 40935119983.06
hypothetical proteinASE00_18350Not AvailablePositive4093594 - 409603886623.5
uracil-dna glycosylaseASE00_18355Q92LU5Positive4096162 - 409688126058.5
pyridoxamine 5'-phosphate oxidaseASE00_18360Not AvailablePositive4096954 - 409741217266.1
permeaseASE00_18365Not AvailableNegative4097416 - 409795219461.1
mfs transporterASE00_18370Not AvailablePositive4098203 - 409946844535.4

Displaying genes 3851 – 3860 of 4474 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

372 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002634-(hydroxymethyl)benzenesulfonateC7H7O4SChemical structure of 4-(hydroxymethyl)benzenesulfonateNot available
Average187.19Da
Monoisotopic187.007053459Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000333(1R,4R)-bornane-2,5-dioneC10H14O2Chemical structure of (1R,4R)-bornane-2,5-dioneNot available
Average166.22Da
Monoisotopic166.0993797Da
BASm0000338(1R,4R,5R)-5-hydroxycamphorC10H16O2Chemical structure of (1R,4R,5R)-5-hydroxycamphorNot available
Average168.2328Da
Monoisotopic168.115029756Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da

Displaying 1–10 of 372 metabolites

Health Effects

No health effects information available for this bacterium.