Sphingomonas sp. Root710

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingomonadaceae

Genus

Sphingomonas

Description

Sphingomonas sp. Root710 is a rod-shaped bacterium that exhibits the presence of flagella, which likely contributes to its motility in various environments. This species is characterized by a single replicon, indicating a streamlined genetic structure, which may influence its adaptability and efficiency in nutrient utilization. The accession number for Sphingomonas sp. Root710 is LMIB00000000.1, which provides a reference point for genomic studies and further characterization of this microorganism. As part of the Sphingomonadaceae family, Sphingomonas species are known for their ability to degrade a variety of organic compounds, including polycyclic aromatic hydrocarbons. This trait suggests that Sphingomonas sp. Root710 may play a significant role in bioremediation processes, particularly in contaminated environments where such compounds are prevalent. In an ecological context, the presence of flagella in Sphingomonas sp. Root710 may enhance its ability to colonize diverse substrates, facilitating its role in nutrient cycling and the decomposition of organic material. The adaptability and metabolic versatility of this bacterium underscore its potential importance in environmental microbiology and ecological health.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingomonadaceae
GenusSphingomonas
SpeciesSphingomonas sp. Root710
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Sphingomonas sp. Root710
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingomonas sp. Root710


Gene Summary

Adenine Count

850122 bp

Thymine Count

845879 bp

Guanine Count

1530473 bp

Cytosine Count

1545664 bp

Genome Length

4772303 bp

Protein-coding Genes

4422 genes

Non-Coding Genes

52 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
3-ketosteroid dehydrogenaseASE00_00055Not AvailableNegative10583 - 1231361456.9
ketosteroid isomeraseASE00_00060Not AvailableNegative12331 - 1277715859.8
(2fe-2s)-binding proteinASE00_00065P0ABR6Negative12822 - 1414149634.7
tetr family transcriptional regulatorASE00_00070Not AvailablePositive14327 - 1498324861.7
short-chain dehydrogenaseASE00_00075P21158Positive15017 - 1569423750.1
xylose isomeraseASE00_00080Not AvailableNegative15713 - 1650127825.2
(2fe-2s)-binding proteinASE00_00085P0ABR8Negative16511 - 1765043395.2
amp-dependent synthetaseASE00_00090Not AvailablePositive17819 - 1945358590.0
oxidoreductaseASE00_00095Not AvailableNegative19460 - 2026027729.1
3-ketoacyl-acp reductaseASE00_00100A0A075TRB3Positive20389 - 2114726146.1

Displaying genes 11 – 20 of 4474 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

372 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002634-(hydroxymethyl)benzenesulfonateC7H7O4SChemical structure of 4-(hydroxymethyl)benzenesulfonateNot available
Average187.19Da
Monoisotopic187.007053459Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000333(1R,4R)-bornane-2,5-dioneC10H14O2Chemical structure of (1R,4R)-bornane-2,5-dioneNot available
Average166.22Da
Monoisotopic166.0993797Da
BASm0000338(1R,4R,5R)-5-hydroxycamphorC10H16O2Chemical structure of (1R,4R,5R)-5-hydroxycamphorNot available
Average168.2328Da
Monoisotopic168.115029756Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da

Displaying 1–10 of 372 metabolites

Health Effects

No health effects information available for this bacterium.