Rhizobium sp. Root708

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Rhizobium

Description

Rhizobium sp. Root708 is characterized by its rod-shaped morphology and the presence of flagella, which suggests that it is motile. This motility can play a crucial role in the bacterium's ability to colonize root systems of host plants, particularly legumes, with which it forms symbiotic relationships. The organism is noted to possess a single replicon, indicating that it has a streamlined genetic architecture. This trait may contribute to its efficiency in replication and adaptability in various environments. Rhizobium sp. Root708 is cataloged under the accession LMHV00000000.1, which allows for its identification and further study within genomic databases. The ecological significance of Rhizobium sp. Root708 lies in its symbiotic relationship with leguminous plants, where it is known to fix atmospheric nitrogen, thereby enriching soil fertility. This nitrogen fixation is essential for plant growth and can enhance agricultural productivity. By forming nodules on the roots of host plants, Rhizobium sp. Root708 not only aids in nitrogen assimilation but also plays a role in the overall health of the ecosystem by promoting plant diversity and soil health. Such interactions exemplify the critical role of microbial life in terrestrial ecosystems, particularly in nutrient cycling and supporting plant communities.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusRhizobium
SpeciesRhizobium sp. Root708
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Rhizobium sp. Root708
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhizobium sp. Root708 contig_9, whole genome shotgun sequence.

Gene Summary

Adenine Count

1252407 bp

Thymine Count

1246588 bp

Guanine Count

1890857 bp

Cytosine Count

1901715 bp

Genome Length

6292121 bp

Protein-coding Genes

5712 genes

Non-Coding Genes

102 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
molybdenum cofactor biosynthesis protein bASE04_14980P0AF00Negative5386958 - 538750919938.7
4-diphosphocytidyl-2c-methyl-d-erythritol kinaseASE04_14985Q1MKS2Negative5387493 - 538840132383.6
hypothetical proteinASE04_14990Not AvailableNegative5388408 - 539024066515.9
polyprenyl synthetaseASE04_14995P0AD57Negative5390372 - 539138836342.7
hypothetical proteinASE04_15000Not AvailablePositive5391497 - 53917248224.07
methyltransferaseASE04_15005Not AvailablePositive5391730 - 539250927689.2
manganese transporterASE04_15010Q8UEM1Negative5392515 - 539385548036.8
peptidase s49ASE04_15015Q2YMB3Positive5394029 - 539488931086.1
hypothetical proteinASE04_15020Not AvailablePositive5394909 - 53951037282.89
glycine--trna ligase subunit alphaASE04_15025B5ZS33Positive5395181 - 539614035723.2

Displaying genes 4991 – 5000 of 5814 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

338 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002583-(carbamoylamino)propanoateC4H7N2O3Chemical structure of 3-(carbamoylamino)propanoateNot available
Average131.112Da
Monoisotopic131.046215673Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000315acetylpyruvateC5H6O4Chemical structure of acetylpyruvateNot available
Average130.099Da
Monoisotopic130.0266087Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da

Displaying 1–10 of 338 metabolites

Health Effects

No health effects information available for this bacterium.