Lysobacter sp. Root690

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Lysobacterales

Family

Lysobacteraceae

Genus

Lysobacter

Description

Lysobacter sp. Root690 is a Gram-negative bacterium characterized by its rod-shaped morphology. This species is notable for possessing a single replicon, which indicates a streamlined genomic architecture that may contribute to its adaptability in various environments. The organism is classified under the genus Lysobacter, which is known for its diverse metabolic capabilities and ecological roles in soil and plant-associated environments. The accession number for this strain is LMHM00000000.1, which provides a reference point for genomic studies and further characterization. The genomic information associated with this accession can facilitate research into the physiological and biochemical properties of Lysobacter sp. Root690, potentially revealing its interactions with other microorganisms and its role in nutrient cycling. Biologically, members of the Lysobacter genus are often associated with the degradation of complex organic materials and may play a significant role in soil health and plant growth promotion. Their ability to thrive in diverse ecological niches underscores their importance in microbial communities. Understanding the traits of Lysobacter sp. Root690 can lead to insights into its potential applications in agriculture, particularly in biocontrol and bioremediation strategies, leveraging its inherent characteristics to foster sustainable practices in soil management.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderLysobacterales
FamilyLysobacteraceae
GenusLysobacter
SpeciesLysobacter sp. Root690
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Lysobacter sp. Root690
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Lysobacter sp. Root690 contig_9, whole genome shotgun sequence.

Gene Summary

Adenine Count

1063748 bp

Thymine Count

1061721 bp

Guanine Count

2076007 bp

Cytosine Count

2079640 bp

Genome Length

6296053 bp

Protein-coding Genes

4914 genes

Non-Coding Genes

70 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
potassium transporter kupASD86_00135Q4UXL9Negative28608 - 3054570428.4
atp-dependent dna helicase ruvaASD86_00140B4ST34Negative30580 - 3117021070.5
crossover junction endodeoxyribonuclease ruvcASD86_00145B4ST35Negative31389 - 3195520093.5
transcriptional regulatorASD86_00150B4ST36Negative32052 - 3278325827.2
hypothetical proteinASD86_00155Not AvailableNegative32985 - 3361121895.6
hypothetical proteinASD86_00160Not AvailablePositive34011 - 3554656231.8
hypothetical proteinASD86_00165P86982Positive36569 - 3776542777.4
hypothetical proteinASD86_00170Not AvailablePositive37818 - 3829716262.7
acetyltransferaseASD86_00175Not AvailableNegative39297 - 3983319896.5
aspartate--trna(asp/asn) ligaseASD86_00180B2FRP1Negative40030 - 4179965635.5

Displaying genes 51 – 60 of 4984 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

246 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000047sophoroseC12H22O11Chemical structure of sophoroseNot available
Average342.297Da
Monoisotopic342.116211528Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000234(3R)-hydroxybutanoate dimerC8H13O5Chemical structure of (3R)-hydroxybutanoate dimerNot available
Average189.188Da
Monoisotopic189.0768471Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da

Displaying 1–10 of 246 metabolites

Health Effects

No health effects information available for this bacterium.