Devosia sp. Root685

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Devosiaceae

Genus

Devosia

Description

Devosia sp. Root685 is a Gram-negative, rod-shaped bacterium, characterized by its single replicon structure. This classification as a Gram-negative organism indicates that it possesses a thin peptidoglycan layer and an outer membrane containing lipopolysaccharides, which are significant for its interactions with the environment. The accession number for Devosia sp. Root685 is LMHK00000000.1, which serves as a unique identifier for this strain in genomic databases. This identification allows for further studies and comparisons with other strains within the Devosia genus and related taxa. The ecological significance of Devosia sp. Root685 can be inferred from its classification within the Devosia genus, which is known for its diverse metabolic capabilities. Members of this genus have been associated with various environments, including soil and plant-associated habitats. Their roles in nutrient cycling and potential plant growth promotion underscore their importance in ecological systems. Overall, Devosia sp. Root685 exemplifies the diversity of microbial life and its essential functions within ecosystems, particularly in the context of soil health and plant interactions. Understanding its specific traits and ecological roles can provide insights into microbial contributions to environmental processes and agricultural practices.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyDevosiaceae
GenusDevosia
SpeciesDevosia sp. Root685
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Arabidopsis thaliana
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Devosia sp. Root685 contig_5, whole genome shotgun sequence.

Gene Summary

Adenine Count

854612 bp

Thymine Count

836450 bp

Guanine Count

1333733 bp

Cytosine Count

1372649 bp

Genome Length

4397626 bp

Protein-coding Genes

3992 genes

Non-Coding Genes

61 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
guanine deaminaseASD83_09270P76641Negative1928150 - 192945147524.6
cysteine desulfuraseASD83_09275Not AvailableNegative1929448 - 193067445477.6
hypothetical proteinASD83_09280Q2YKI6Negative1930746 - 193183138398.6
abc transporter permeaseASD83_09285D4GPW1Negative1931887 - 193280732042.0
sugar abc transporter permeaseASD83_09290D4GPW2Negative1932807 - 193388938633.5
abc transporterASD83_09295O05253Negative1933889 - 193540653429.1
xanthine dehydrogenase accessory protein xdhcASD83_09300Not AvailableNegative1935408 - 193626830234.7
aldehyde oxidaseASD83_09305Q54FB7Negative1936426 - 193875683759.5
fad-binding molybdopterin dehydrogenaseASD83_09310Q12553Negative1938756 - 194022253310.3
5-hydroxyisourate hydrolaseASD83_09315Q92UG5Negative1940226 - 194057913253.7

Displaying genes 1841 – 1850 of 2008 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

150 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000232(4S)-perillyl alcoholC10H16OChemical structure of (4S)-perillyl alcoholNot available
Average152.237Da
Monoisotopic152.1201151Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000491D-erythruloseC4H8O4Chemical structure of D-erythruloseNot available
Average120.104Da
Monoisotopic120.0422587Da
BASm00006473-hydroxypropanoateC3H5O3Chemical structure of 3-hydroxypropanoateNot available
Average89.071Da
Monoisotopic89.0244176Da
BASm00006985-dehydro-2-deoxy-D-gluconateC6H9O6Chemical structure of 5-dehydro-2-deoxy-D-gluconateNot available
Average177.133Da
Monoisotopic177.04046159Da
BASm0000701aldehydo-D-apioseC5H10O5Chemical structure of aldehydo-D-apioseNot available
Average150.13Da
Monoisotopic150.052823422Da
BASm00007052-dehydro-3-deoxy-D-arabinonateC5H7O5Chemical structure of 2-dehydro-3-deoxy-D-arabinonateNot available
Average147.107Da
Monoisotopic147.0298969Da

Displaying 1–10 of 150 metabolites

Health Effects

No health effects information available for this bacterium.