Pseudoxanthomonas sp. Root65

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Lysobacterales

Family

Lysobacteraceae

Genus

Pseudoxanthomonas

Description

Pseudoxanthomonas sp. Root65 is characterized by its rod-shaped morphology. This bacterium possesses a single replicon, which is indicative of its genetic structure and replication mechanism. The genomic information for Pseudoxanthomonas sp. Root65 is cataloged under the accession number LMHA00000000.1. The rod shape of Pseudoxanthomonas sp. Root65 suggests that it may have specific adaptations for motility and colonization in its environment. While the data does not provide specific details regarding its ecological niche or interactions with other organisms, the presence of a single replicon can imply a streamlined genetic organization that may be advantageous for survival in competitive microbial communities. The ecological insight drawn from the traits of Pseudoxanthomonas sp. Root65 emphasizes the importance of its morphological and genetic characteristics in understanding its role within its habitat. Rod-shaped bacteria are often known for their versatility and ability to thrive in diverse environments, potentially contributing to nutrient cycling and soil health. Further research into the specific ecological functions of Pseudoxanthomonas sp. Root65 could reveal its significance in microbial communities and its potential applications in biotechnology or agriculture.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderLysobacterales
FamilyLysobacteraceae
GenusPseudoxanthomonas
SpeciesPseudoxanthomonas sp. Root65
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudoxanthomonas sp. Root65 contig_7, whole genome shotgun

Gene Summary

Adenine Count

632434 bp

Thymine Count

630811 bp

Guanine Count

1325395 bp

Cytosine Count

1304935 bp

Genome Length

3893603 bp

Protein-coding Genes

3422 genes

Non-Coding Genes

53 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinASD77_00010Not AvailableNegative1700 - 256031664.1
hypothetical proteinASD77_00015O30409Negative2557 - 8346211096.0
hypothetical proteinASD77_00020E9F8M3Negative8343 - 15596259982.0
sugar transferaseASD77_00025B3FN88Negative16005 - 1739952374.6
hypothetical proteinASD77_00030Not AvailableNegative17538 - 1832928744.8
Trna-argNot AvailableNot AvailablePositive18473 - 18549Not Available
Trna-serNot AvailableNot AvailablePositive18736 - 18828Not Available
carbon storage regulatorASD77_00045Q8PLP9Negative18903 - 191127553.09
alanine--trna ligaseASD77_00050B2FL33Negative19264 - 2191595192.3
recombinase recxASD77_00055Q3BUQ8Negative22008 - 2252318854.2

Displaying genes 1 – 10 of 3475 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

189 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000047sophoroseC12H22O11Chemical structure of sophoroseNot available
Average342.297Da
Monoisotopic342.116211528Da
BASm0000234(3R)-hydroxybutanoate dimerC8H13O5Chemical structure of (3R)-hydroxybutanoate dimerNot available
Average189.188Da
Monoisotopic189.0768471Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0000642S-adenosyl-4-methylsulfanyl-2-oxobutanoateC15H19N5O6SChemical structure of S-adenosyl-4-methylsulfanyl-2-oxobutanoateNot available
Average397.406Da
Monoisotopic397.105604055Da

Displaying 1–10 of 189 metabolites

Health Effects

No health effects information available for this bacterium.