Devosia sp. Root635

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Devosiaceae

Genus

Devosia

Description

Devosia sp. Root635 is a Gram-negative bacterium characterized by its rod-shaped morphology. This species is notable for possessing a single replicon, which is a feature that can influence its genetic stability and replication efficiency. The strain is cataloged under the accession number LMGZ00000000.1, providing a reference point for researchers interested in studying its genetic and phenotypic properties. The classification of Devosia sp. Root635 within the broader context of microbial diversity suggests its potential ecological roles, particularly in soil or rhizosphere environments where it may interact with plant roots or other microorganisms. The Gram-negative characteristic indicates that it possesses a thinner peptidoglycan layer and an outer membrane, which can impact its interactions with the environment and other organisms. Understanding the traits of Devosia sp. Root635 can provide insights into its adaptability and ecological functions, possibly contributing to nutrient cycling or plant growth promotion within its habitat. Further research on this strain could elucidate its specific roles in microbial communities and its potential applications in agriculture or biotechnology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyDevosiaceae
GenusDevosia
SpeciesDevosia sp. Root635
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Arabidopsis thaliana
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Devosia sp. Root635 contig_9, whole genome shotgun sequence.

Gene Summary

Adenine Count

689435 bp

Thymine Count

680885 bp

Guanine Count

1232839 bp

Cytosine Count

1213456 bp

Genome Length

3816678 bp

Protein-coding Genes

3555 genes

Non-Coding Genes

74 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
phosphonate abc transporter substrate-binding proteinASD80_12450P39665Negative3727144 - 372815434739.6
aldo/keto reductaseASD80_12455Q8ZH36Negative3728552 - 372934628301.2
iclr family transcriptional regulatorASD80_12460Q52154Negative3729424 - 373017927163.0
Trna-metNot AvailableNot AvailablePositive3730334 - 3730409Not Available
transcriptional regulatorASD80_12470Q8G9F9Negative3730459 - 373159539874.3
arac family transcriptional regulatorASD80_12475Q9HTH5Positive3731685 - 373263834483.4
hypothetical proteinASD80_12480Not AvailablePositive3732712 - 373329920996.3
3-hydroxydecanoyl-acp dehydrataseASD80_12485Q0BWN5Positive3733307 - 373384019056.1
hypothetical proteinASD80_12490E1V7V7Negative3733896 - 373526649030.6
nad-dependent succinate-semialdehyde dehydrogenaseASD80_12495E1V7V8Negative3735293 - 373678052691.8

Displaying genes 3541 – 3550 of 3629 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

228 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002583-(carbamoylamino)propanoateC4H7N2O3Chemical structure of 3-(carbamoylamino)propanoateNot available
Average131.112Da
Monoisotopic131.046215673Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da

Displaying 1–10 of 228 metabolites

Health Effects

No health effects information available for this bacterium.