Devosia sp. Root635

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Devosiaceae

Genus

Devosia

Description

Devosia sp. Root635 is a Gram-negative bacterium characterized by its rod-shaped morphology. This species is notable for possessing a single replicon, which is a feature that can influence its genetic stability and replication efficiency. The strain is cataloged under the accession number LMGZ00000000.1, providing a reference point for researchers interested in studying its genetic and phenotypic properties. The classification of Devosia sp. Root635 within the broader context of microbial diversity suggests its potential ecological roles, particularly in soil or rhizosphere environments where it may interact with plant roots or other microorganisms. The Gram-negative characteristic indicates that it possesses a thinner peptidoglycan layer and an outer membrane, which can impact its interactions with the environment and other organisms. Understanding the traits of Devosia sp. Root635 can provide insights into its adaptability and ecological functions, possibly contributing to nutrient cycling or plant growth promotion within its habitat. Further research on this strain could elucidate its specific roles in microbial communities and its potential applications in agriculture or biotechnology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyDevosiaceae
GenusDevosia
SpeciesDevosia sp. Root635
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Arabidopsis thaliana
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Devosia sp. Root635 contig_9, whole genome shotgun sequence.

Gene Summary

Adenine Count

689435 bp

Thymine Count

680885 bp

Guanine Count

1232839 bp

Cytosine Count

1213456 bp

Genome Length

3816678 bp

Protein-coding Genes

3555 genes

Non-Coding Genes

74 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
gntr family transcriptional regulatorASD80_05300Not AvailablePositive2269113 - 226981725987.2
urease accessory proteinASD80_05305P27650Negative2269929 - 227052219748.0
hypothetical proteinASD80_05310Not AvailablePositive2270817 - 227120614105.0
Trna-trpNot AvailableNot AvailablePositive2271263 - 2271338Not Available
hypothetical proteinASD80_05320Not AvailableNegative2271382 - 227223630494.9
hypothetical proteinASD80_05325Not AvailableNegative2272287 - 227256810226.2
preprotein translocase subunit seceASD80_05330Not AvailablePositive2272824 - 22730217294.25
antitermination protein nusgASD80_05335P65591Positive2273062 - 227359220135.2
50s ribosomal protein l11ASD80_05340Q134R3Positive2273732 - 227416014959.4
50s ribosomal protein l1ASD80_05345B6JER6Positive2274165 - 227485724194.6

Displaying genes 2141 – 2150 of 3629 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

228 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002583-(carbamoylamino)propanoateC4H7N2O3Chemical structure of 3-(carbamoylamino)propanoateNot available
Average131.112Da
Monoisotopic131.046215673Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da

Displaying 1–10 of 228 metabolites

Health Effects

No health effects information available for this bacterium.