Nocardioides sp. Root614

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Propionibacteriales

Family

Nocardioidaceae

Genus

Nocardioides

Description

Nocardioides sp. Root614 is characterized by having a single replicon, indicating a streamlined genomic organization. Its genomic data is accessible through the accession number LMGV00000000.1, which provides a reference point for researchers interested in studying this organism further. This bacterium belongs to the genus Nocardioides, which is known for its ability to degrade various organic compounds and its potential role in bioremediation processes. The presence of a single replicon may suggest efficient replication and resource allocation, traits often advantageous for survival in diverse environments. Understanding the genomic features of Nocardioides sp. Root614 can provide insights into its ecological role, particularly in soil ecosystems where it may contribute to nutrient cycling and organic matter degradation. The study of this bacterium could also illuminate its potential applications in environmental biotechnology, especially regarding the breakdown of pollutants. Overall, Nocardioides sp. Root614 exemplifies the ecological significance of soil-dwelling actinobacteria and their contributions to ecosystem health.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderPropionibacteriales
FamilyNocardioidaceae
GenusNocardioides
SpeciesNocardioides sp. Root614
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Nocardioides sp. Root614 contig_8, whole genome shotgun sequence.

Gene Summary

Adenine Count

800483 bp

Thymine Count

797753 bp

Guanine Count

1806178 bp

Cytosine Count

1809748 bp

Genome Length

5214352 bp

Protein-coding Genes

4775 genes

Non-Coding Genes

63 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
proteasome atpaseASD81_23660Not AvailableNegative5040629 - 504239865565.9
transposaseASD81_23665Not AvailableNegative5042496 - 504344934303.9
peptidase m50ASD81_23670Not AvailableNegative5043459 - 504458339079.9
hypothetical proteinASD81_23675Not AvailableNegative5044593 - 504533626683.8
hydrolaseASD81_23685Not AvailableNegative5046360 - 504697721833.1
methionine synthaseASD81_23690Not AvailableNegative5047000 - 5050740136979.0
carboxylate--amine ligaseASD81_23695Not AvailablePositive5050860 - 505170531257.7
cysteine--1-d-myo-inosityl 2-amino-2-deoxy-alpha-d-glucopyranoside ligaseASD81_23700Not AvailableNegative5051706 - 505294144690.6
phosphatidylinositol kinaseASD81_23705Not AvailableNegative5052983 - 505372627141.1
hypothetical proteinASD81_23710Not AvailableNegative5053736 - 505429019875.8

Displaying genes 4661 – 4670 of 4838 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.