Nocardioides sp. Root614

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Propionibacteriales

Family

Nocardioidaceae

Genus

Nocardioides

Description

Nocardioides sp. Root614 is characterized by having a single replicon, indicating a streamlined genomic organization. Its genomic data is accessible through the accession number LMGV00000000.1, which provides a reference point for researchers interested in studying this organism further. This bacterium belongs to the genus Nocardioides, which is known for its ability to degrade various organic compounds and its potential role in bioremediation processes. The presence of a single replicon may suggest efficient replication and resource allocation, traits often advantageous for survival in diverse environments. Understanding the genomic features of Nocardioides sp. Root614 can provide insights into its ecological role, particularly in soil ecosystems where it may contribute to nutrient cycling and organic matter degradation. The study of this bacterium could also illuminate its potential applications in environmental biotechnology, especially regarding the breakdown of pollutants. Overall, Nocardioides sp. Root614 exemplifies the ecological significance of soil-dwelling actinobacteria and their contributions to ecosystem health.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderPropionibacteriales
FamilyNocardioidaceae
GenusNocardioides
SpeciesNocardioides sp. Root614
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Nocardioides sp. Root614 contig_8, whole genome shotgun sequence.

Gene Summary

Adenine Count

800483 bp

Thymine Count

797753 bp

Guanine Count

1806178 bp

Cytosine Count

1809748 bp

Genome Length

5214352 bp

Protein-coding Genes

4775 genes

Non-Coding Genes

63 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
amp-dependent synthetaseASD81_20500Not AvailablePositive4377388 - 437841635634.5
o-succinylbenzoate synthaseASD81_20505Not AvailablePositive4378413 - 437936333509.2
2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthaseASD81_20510Not AvailablePositive4379360 - 438102457658.6
sodium:proton antiporterASD81_20515Not AvailablePositive4381027 - 438289266944.7
mbl fold metallo-hydrolaseASD81_20520Not AvailablePositive4382903 - 438354122697.0
hypothetical proteinASD81_20525Not AvailablePositive4383584 - 438425823292.2
peptidoglycan-binding proteinASD81_20530Not AvailableNegative4384273 - 438521133969.9
ubiquinone biosynthesis methyltransferase ubieASD81_20535Not AvailablePositive4385318 - 438600725234.1
hypothetical proteinASD81_20540Not AvailablePositive4386016 - 438647416660.9
nadh dehydrogenaseASD81_20550Not AvailablePositive4387157 - 438757215094.7

Displaying genes 4051 – 4060 of 4838 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
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Health Effects

No health effects information available for this bacterium.