Lysobacter sp. Root604

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Lysobacterales

Family

Lysobacteraceae

Genus

Lysobacter

Description

Lysobacter sp. Root604 is a Gram-negative bacterium characterized by its rod-shaped morphology. It possesses a single replicon, which is indicative of its genetic structure. The strain is cataloged under the accession LMGS00000000.1, providing a reference point for further studies and comparisons in microbial research. Lysobacter species are known for their ecological roles, particularly in soil environments where they contribute to the degradation of organic matter. This genus has garnered interest due to its potential applications in biocontrol and bioremediation, as certain Lysobacter strains exhibit antimicrobial properties and can suppress plant pathogens. The specific traits of Lysobacter sp. Root604 may also reflect its adaptability and functionality in its native habitat, although additional details about its metabolic capabilities, ecological interactions, and specific applications remain to be elucidated. In summary, Lysobacter sp. Root604 represents a taxonomically distinct Gram-negative rod bacterium with a single replicon, signifying a streamlined genomic organization. Its ecological role within soil ecosystems, alongside potential biotechnological applications, positions this strain as a candidate for further investigation in microbial ecology and applied microbiology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderLysobacterales
FamilyLysobacteraceae
GenusLysobacter
SpeciesLysobacter sp. Root604
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Lysobacter sp. Root604
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Lysobacter sp. Root604 contig_9, whole genome shotgun sequence.

Gene Summary

Adenine Count

754897 bp

Thymine Count

758416 bp

Guanine Count

1641306 bp

Cytosine Count

1628850 bp

Genome Length

4784122 bp

Protein-coding Genes

4029 genes

Non-Coding Genes

79 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
preprotein translocase subunit secyASD69_00115P0AGA4Positive11281 - 1264248618.4
30s ribosomal protein s13ASD69_00120Q8NKX3Positive12875 - 1323113286.4
30s ribosomal protein s11ASD69_00125P0A0X3Positive13242 - 1363413844.8
30s ribosomal protein s4ASD69_00130B4SLH4Positive13649 - 1427823297.1
dna-directed rna polymerase subunit alphaASD69_00135P0A0Y2Positive14329 - 1532736424.9
50s ribosomal protein l17ASD69_00140B4SLH6Positive15618 - 1598913752.8
disulfide bond formation protein bASD69_00145Q3BWV6Positive16225 - 1674018276.9
phospho-2-dehydro-3-deoxyheptonate aldolaseASD69_00150P29976Positive16802 - 1819051786.7
hypothetical proteinASD69_00155Not AvailablePositive18276 - 1873116257.3
amidaseASD69_00160A0A1P8B760Negative18951 - 2045652429.4

Displaying genes 51 – 60 of 2858 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

157 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000047sophoroseC12H22O11Chemical structure of sophoroseNot available
Average342.297Da
Monoisotopic342.116211528Da
BASm0000234(3R)-hydroxybutanoate dimerC8H13O5Chemical structure of (3R)-hydroxybutanoate dimerNot available
Average189.188Da
Monoisotopic189.0768471Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0000491D-erythruloseC4H8O4Chemical structure of D-erythruloseNot available
Average120.104Da
Monoisotopic120.0422587Da
BASm00007164-methylsulfanyl-2-oxobutanoateC5H7O3SChemical structure of 4-methylsulfanyl-2-oxobutanoateNot available
Average147.17Da
Monoisotopic147.012138839Da

Displaying 1–10 of 157 metabolites

Health Effects

No health effects information available for this bacterium.