Devosia sp. Root436

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Devosiaceae

Genus

Devosia

Description

Devosia sp. Root436 is a Gram-negative bacterium characterized by its rod shape. This organism possesses a single replicon, which is indicative of its genetic structure and replication mechanism. The taxonomic lineage and phylogenetic relationships of Devosia sp. Root436 are supported by its accession number, LMEM00000000.1, allowing for further genomic analysis and comparison within the genus. Gram-negative bacteria, such as Devosia sp. Root436, typically have a unique cell wall structure that includes a thin peptidoglycan layer and an outer membrane containing lipopolysaccharides. This characteristic can influence their survival in various environments and their interactions with other microorganisms. While specific ecological roles or metabolic capabilities of Devosia sp. Root436 are not detailed, members of the genus Devosia are generally known to be involved in processes such as nitrogen fixation and have been isolated from diverse environments, including soil and root ecosystems. This suggests that Devosia sp. Root436 may play a role in nutrient cycling and plant-microbe interactions, which are crucial for maintaining soil health and fertility. In summary, the traits of Devosia sp. Root436, including its Gram-negative status, rod shape, and single replicon, contribute to its classification and potential ecological importance. Further research may reveal its specific interactions within its environment, highlighting the significance of this bacterium in microbial communities.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyDevosiaceae
GenusDevosia
SpeciesDevosia sp. Root436
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Arabidopsis thaliana
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Devosia sp. Root436 contig_9, whole genome shotgun sequence.

Gene Summary

Adenine Count

712383 bp

Thymine Count

705379 bp

Guanine Count

1236188 bp

Cytosine Count

1265035 bp

Genome Length

3919126 bp

Protein-coding Genes

3657 genes

Non-Coding Genes

87 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Gene transfer aget (gta) orfg9-like phage major tail proteinASD04_18020Not AvailableNegative830724 - 83113714285.9
hypothetical proteinASD04_18025Not AvailableNegative831303 - 83169213806.6
hypothetical proteinASD04_18030Not AvailableNegative831715 - 83202611372.6
Hypothetical proteinASD04_18035Not AvailableNegative832053 - 83261920194.2
Major capsid protein precursorASD04_18040Not AvailableNegative833045 - 83426543407.2
Putative prohead proteaseASD04_18045Not AvailableNegative834278 - 83475417216.8
hypothetical proteinASD04_18050Not AvailableNegative834887 - 8350757144.59
hypothetical proteinASD04_18055Not AvailableNegative835194 - 83554412916.3
hypothetical proteinASD04_18060Not AvailableNegative835551 - 83619824067.7
hypothetical proteinASD04_18065Not AvailableNegative836198 - 83660815027.2

Displaying genes 11 – 20 of 3744 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

237 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002583-(carbamoylamino)propanoateC4H7N2O3Chemical structure of 3-(carbamoylamino)propanoateNot available
Average131.112Da
Monoisotopic131.046215673Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000315acetylpyruvateC5H6O4Chemical structure of acetylpyruvateNot available
Average130.099Da
Monoisotopic130.0266087Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da

Displaying 1–10 of 237 metabolites

Health Effects

No health effects information available for this bacterium.