Variovorax sp. Root434

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Variovorax

Description

Variovorax sp. Root434 is a rod-shaped bacterium characterized by a single replicon, indicating a streamlined genomic architecture. The strain has been cataloged under the accession number LMEK00000000.1, which provides a reference point for genetic and taxonomic studies. As a member of the Variovorax genus, this bacterium is likely to exhibit traits associated with environmental adaptability and metabolic diversity. While specific metabolic capabilities of Variovorax sp. Root434 are not detailed here, members of the genus are generally known for their ability to degrade various organic compounds, which may suggest a role in bioremediation or nutrient cycling in their native environments. The ecological significance of Variovorax sp. Root434 may lie in its potential contributions to soil health and microbial community dynamics. Rod-shaped bacteria are often involved in processes like organic matter decomposition and nutrient availability, which are crucial for sustaining plant growth and ecosystem functioning. Therefore, understanding the traits and capabilities of Variovorax sp. Root434 can provide insights into its role in ecological systems, particularly in relation to soil microbiomes and their impact on plant health and productivity.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusVariovorax
SpeciesVariovorax sp. Root434
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Variovorax sp. Root434 contig_9, whole genome shotgun sequence.

Gene Summary

Adenine Count

1045514 bp

Thymine Count

1045964 bp

Guanine Count

2116129 bp

Cytosine Count

2114066 bp

Genome Length

6322190 bp

Protein-coding Genes

5684 genes

Non-Coding Genes

74 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
atp phosphoribosyltransferaseASD05_00265Not AvailablePositive57884 - 5852523042.2
histidinol dehydrogenaseASD05_00270Not AvailablePositive58537 - 5985946664.7
hypothetical proteinASD05_00275Not AvailablePositive59898 - 6073129792.2
hypothetical proteinASD05_00280Not AvailablePositive60731 - 6108412948.6
histidinol-phosphate aminotransferaseASD05_00285Not AvailablePositive61081 - 6217239278.0
imidazoleglycerol-phosphate dehydrataseASD05_00290Not AvailablePositive62169 - 6277721899.2
imidazole glycerol phosphate synthase subunit hishASD05_00295Not AvailablePositive62797 - 6345623903.5
1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomeraseASD05_00300Not AvailablePositive63520 - 6426026009.2
amino acid abc transporter substrate-binding proteinASD05_00305Not AvailableNegative64518 - 6543833506.4
c4-dicarboxylate abc transporterASD05_00310Not AvailableNegative65447 - 6675146383.3

Displaying genes 71 – 80 of 5758 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.