Variovorax sp. Root434

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Variovorax

Description

Variovorax sp. Root434 is a rod-shaped bacterium characterized by a single replicon, indicating a streamlined genomic architecture. The strain has been cataloged under the accession number LMEK00000000.1, which provides a reference point for genetic and taxonomic studies. As a member of the Variovorax genus, this bacterium is likely to exhibit traits associated with environmental adaptability and metabolic diversity. While specific metabolic capabilities of Variovorax sp. Root434 are not detailed here, members of the genus are generally known for their ability to degrade various organic compounds, which may suggest a role in bioremediation or nutrient cycling in their native environments. The ecological significance of Variovorax sp. Root434 may lie in its potential contributions to soil health and microbial community dynamics. Rod-shaped bacteria are often involved in processes like organic matter decomposition and nutrient availability, which are crucial for sustaining plant growth and ecosystem functioning. Therefore, understanding the traits and capabilities of Variovorax sp. Root434 can provide insights into its role in ecological systems, particularly in relation to soil microbiomes and their impact on plant health and productivity.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusVariovorax
SpeciesVariovorax sp. Root434
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Variovorax sp. Root434 contig_9, whole genome shotgun sequence.

Gene Summary

Adenine Count

1045514 bp

Thymine Count

1045964 bp

Guanine Count

2116129 bp

Cytosine Count

2114066 bp

Genome Length

6322190 bp

Protein-coding Genes

5684 genes

Non-Coding Genes

74 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
glutamate--cysteine ligaseASD05_03545Not AvailablePositive744731 - 74628757087.1
hypothetical proteinASD05_03550Not AvailablePositive746412 - 74679514253.9
3-hydroxyacyl-coa dehydrogenaseASD05_03555Not AvailablePositive746892 - 74781831861.2
ketosteroid isomeraseASD05_03560Not AvailablePositive747920 - 74834815836.7
merr family transcriptional regulatorASD05_03565Not AvailablePositive748338 - 74878717054.8
ribosomal subunit interface proteinASD05_03570Not AvailableNegative748794 - 74915313364.6
histidine kinaseASD05_03575Not AvailableNegative749278 - 74970616034.5
cell envelope protein smpaASD05_03580Not AvailableNegative749852 - 75046622426.1
ribosome biogenesis gtpase ylqfASD05_03585Not AvailablePositive750676 - 75163834849.3
phenylacetic acid degradation proteinASD05_03590Not AvailablePositive751806 - 75224015166.2

Displaying genes 731 – 740 of 5758 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.