Variovorax sp. Root434

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Variovorax

Description

Variovorax sp. Root434 is a rod-shaped bacterium characterized by a single replicon, indicating a streamlined genomic architecture. The strain has been cataloged under the accession number LMEK00000000.1, which provides a reference point for genetic and taxonomic studies. As a member of the Variovorax genus, this bacterium is likely to exhibit traits associated with environmental adaptability and metabolic diversity. While specific metabolic capabilities of Variovorax sp. Root434 are not detailed here, members of the genus are generally known for their ability to degrade various organic compounds, which may suggest a role in bioremediation or nutrient cycling in their native environments. The ecological significance of Variovorax sp. Root434 may lie in its potential contributions to soil health and microbial community dynamics. Rod-shaped bacteria are often involved in processes like organic matter decomposition and nutrient availability, which are crucial for sustaining plant growth and ecosystem functioning. Therefore, understanding the traits and capabilities of Variovorax sp. Root434 can provide insights into its role in ecological systems, particularly in relation to soil microbiomes and their impact on plant health and productivity.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusVariovorax
SpeciesVariovorax sp. Root434
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Variovorax sp. Root434 contig_9, whole genome shotgun sequence.

Gene Summary

Adenine Count

1045514 bp

Thymine Count

1045964 bp

Guanine Count

2116129 bp

Cytosine Count

2114066 bp

Genome Length

6322190 bp

Protein-coding Genes

5684 genes

Non-Coding Genes

74 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
sulfoxide reductase catalytic subunit yedyASD05_00115Not AvailablePositive26128 - 2714737843.3
sulfite oxidaseASD05_00120Not AvailablePositive27176 - 2783524773.1
diaminopimelate decarboxylaseASD05_00125Not AvailableNegative27846 - 2913245673.9
hypothetical proteinASD05_00130Not AvailableNegative29129 - 294019023.84
iron donor protein cyayASD05_00135Not AvailablePositive29414 - 2974612138.1
penicillin-binding proteinASD05_00140Not AvailableNegative29757 - 3217187765.9
pilus assembly protein pilmASD05_00145Not AvailablePositive32412 - 3349139004.7
fimbrial proteinASD05_00150Not AvailablePositive33488 - 3410822792.6
pilus assembly protein piloASD05_00155Not AvailablePositive34115 - 3479225037.1
pilus assembly protein pilpASD05_00160Not AvailablePositive34789 - 3532820016.2

Displaying genes 41 – 50 of 5758 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.