Massilia sp. Root418

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Oxalobacteraceae

Genus

Massilia

Description

Massilia sp. Root418 is a Gram-negative bacterium characterized by its rod-shaped morphology. This species is notable for possessing a single replicon, which is significant in understanding its genomic stability and replication mechanisms. The organism has been cataloged with the accession number LMEC00000000.1, providing a reference point for further studies and genetic analysis. As a member of the diverse genus Massilia, Root418 likely occupies specific ecological niches, potentially contributing to various microbial communities. The Gram-negative nature of this bacterium suggests that it has a complex cell wall structure, which includes an outer membrane that can play a role in its interactions with the environment, including resistance to certain antimicrobial agents. The ecological role of Massilia sp. Root418 could be significant, particularly in soil or aquatic environments where it may participate in nutrient cycling or interact with plant roots, although specific interactions and functions remain unexamined. The presence of a single replicon may also indicate a streamlined genomic organization that could facilitate adaptation to its ecological niche. Further research into this organism could reveal its potential applications in biotechnology or its role in environmental processes.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyOxalobacteraceae
GenusMassilia
SpeciesMassilia sp. Root418
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Massilia sp. Root418
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Massilia sp. Root418


Gene Summary

Adenine Count

1240401 bp

Thymine Count

1239995 bp

Guanine Count

2386023 bp

Cytosine Count

2405968 bp

Genome Length

7272945 bp

Protein-coding Genes

6016 genes

Non-Coding Genes

139 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
AttlNot AvailableNot AvailablePositive2582160 - 2582171Not Available
Integrase gp31ASC94_09070Not AvailablePositive2582440 - 258372948700.5
dinucleotide-utilizing proteinASC94_09075Not AvailableNegative2583955 - 258470127348.9
hypothetical proteinASC94_09080Not AvailableNegative2584710 - 258548327598.0
hypothetical proteinASC94_09085Not AvailableNegative2585495 - 258624127260.6
hypothetical proteinASC94_09090Not AvailableNegative2586238 - 258732040022.5
hypothetical proteinASC94_09095Not AvailableNegative2587317 - 25875297122.76
hypotheticalASC94_09100Not AvailableNegative2587793 - 25879997748.03
hypothetical proteinASC94_09105Not AvailableNegative2588009 - 258891426746.5
hypothetical proteinASC94_09110Not AvailableNegative2588931 - 258936816564.0

Displaying genes 1 – 10 of 6155 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

316 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000234(3R)-hydroxybutanoate dimerC8H13O5Chemical structure of (3R)-hydroxybutanoate dimerNot available
Average189.188Da
Monoisotopic189.0768471Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002583-(carbamoylamino)propanoateC4H7N2O3Chemical structure of 3-(carbamoylamino)propanoateNot available
Average131.112Da
Monoisotopic131.046215673Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000288aminohydroquinoneC6H7NO2Chemical structure of aminohydroquinoneNot available
Average125.127Da
Monoisotopic125.0476785Da

Displaying 1–10 of 316 metabolites

Health Effects

No health effects information available for this bacterium.