Variovorax sp. Root411

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Variovorax

Description

Variovorax sp. Root411 is characterized as a rod-shaped bacterium with a single replicon. This trait suggests a streamlined genetic architecture, potentially allowing for efficient replication and adaptation to its environment. The organism is cataloged under the accession number LMDW00000000.1, which serves as a reference point for its genetic and taxonomic information. The rod shape of Variovorax sp. Root411 may confer advantages in motility and surface adhesion, traits that are often crucial for bacteria in various ecological niches, particularly in soil and rhizosphere environments. The ability to thrive in these environments is essential for the bacterium's interactions with plants and other microorganisms, contributing to nutrient cycling and soil health. In summary, the simple structure of Variovorax sp. Root411, with its single replicon and rod shape, highlights its potential for adaptability in complex ecosystems. Such traits may play a significant role in its ecological interactions, particularly in supporting plant health and soil microbiome dynamics.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusVariovorax
SpeciesVariovorax sp. Root411
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Variovorax sp. Root411 contig_9, whole genome shotgun sequence.

Gene Summary

Adenine Count

1013851 bp

Thymine Count

1009264 bp

Guanine Count

2025251 bp

Cytosine Count

2015464 bp

Genome Length

6064537 bp

Protein-coding Genes

5397 genes

Non-Coding Genes

61 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
peptide abc transporter permeaseASC92_13075Not AvailablePositive3919817 - 392081236821.2
microcin abc transporter atp-binding proteinASC92_13080Not AvailablePositive3920812 - 392244658617.7
mfs transporterASC92_13085Not AvailablePositive3922463 - 392366541017.8
ribosome maturation protein rimpASC92_13090Not AvailablePositive3923861 - 392450823280.7
transcription elongation factor nusaASC92_13095Not AvailablePositive3924525 - 392601855121.7
translation initiation factor if-2ASC92_13100Not AvailablePositive3926043 - 3929033106049.0
ribosome-binding factor aASC92_13105Not AvailablePositive3929058 - 392942913731.5
trna pseudouridine synthase bASC92_13110Not AvailablePositive3929432 - 393038834124.0
gtp-binding protein typaASC92_13115Not AvailablePositive3930385 - 393222367369.8
permeaseASC92_13120Not AvailablePositive3932249 - 393316632364.5

Displaying genes 3541 – 3550 of 5458 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.