Variovorax sp. Root411

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Variovorax

Description

Variovorax sp. Root411 is characterized as a rod-shaped bacterium with a single replicon. This trait suggests a streamlined genetic architecture, potentially allowing for efficient replication and adaptation to its environment. The organism is cataloged under the accession number LMDW00000000.1, which serves as a reference point for its genetic and taxonomic information. The rod shape of Variovorax sp. Root411 may confer advantages in motility and surface adhesion, traits that are often crucial for bacteria in various ecological niches, particularly in soil and rhizosphere environments. The ability to thrive in these environments is essential for the bacterium's interactions with plants and other microorganisms, contributing to nutrient cycling and soil health. In summary, the simple structure of Variovorax sp. Root411, with its single replicon and rod shape, highlights its potential for adaptability in complex ecosystems. Such traits may play a significant role in its ecological interactions, particularly in supporting plant health and soil microbiome dynamics.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusVariovorax
SpeciesVariovorax sp. Root411
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Variovorax sp. Root411 contig_9, whole genome shotgun sequence.

Gene Summary

Adenine Count

1013851 bp

Thymine Count

1009264 bp

Guanine Count

2025251 bp

Cytosine Count

2015464 bp

Genome Length

6064537 bp

Protein-coding Genes

5397 genes

Non-Coding Genes

61 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
type iv secretion system family proteinASC92_11865Not AvailableNegative3654900 - 365563126816.2
conjugal transfer proteinASC92_11870Not AvailableNegative3655624 - 365813194002.0
type iv secretion system protein virb3ASC92_11875Not AvailableNegative3658144 - 365851214053.5
transposaseASC92_11880Not AvailableNegative3658526 - 365885811586.5
hypothetical proteinASC92_11885Not AvailableNegative3658855 - 365935517400.4
cobyrinic acid ac-diamide synthaseASC92_11890Not AvailablePositive3659659 - 366044728456.8
chromosome partitioning protein parbASC92_11895Not AvailablePositive3660444 - 366134332696.8
arac family transcriptional regulatorASC92_11900Not AvailableNegative3661452 - 366242935885.6
luxr family transcriptional regulatorASC92_11905Not AvailablePositive3662754 - 366346426153.3
n-acylhomoserine lactone synthaseASC92_11910Not AvailableNegative3663507 - 366410322089.7

Displaying genes 3301 – 3310 of 5458 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.