Variovorax sp. Root411

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Variovorax

Description

Variovorax sp. Root411 is characterized as a rod-shaped bacterium with a single replicon. This trait suggests a streamlined genetic architecture, potentially allowing for efficient replication and adaptation to its environment. The organism is cataloged under the accession number LMDW00000000.1, which serves as a reference point for its genetic and taxonomic information. The rod shape of Variovorax sp. Root411 may confer advantages in motility and surface adhesion, traits that are often crucial for bacteria in various ecological niches, particularly in soil and rhizosphere environments. The ability to thrive in these environments is essential for the bacterium's interactions with plants and other microorganisms, contributing to nutrient cycling and soil health. In summary, the simple structure of Variovorax sp. Root411, with its single replicon and rod shape, highlights its potential for adaptability in complex ecosystems. Such traits may play a significant role in its ecological interactions, particularly in supporting plant health and soil microbiome dynamics.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusVariovorax
SpeciesVariovorax sp. Root411
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Variovorax sp. Root411 contig_9, whole genome shotgun sequence.

Gene Summary

Adenine Count

1013851 bp

Thymine Count

1009264 bp

Guanine Count

2025251 bp

Cytosine Count

2015464 bp

Genome Length

6064537 bp

Protein-coding Genes

5397 genes

Non-Coding Genes

61 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
imidazole glycerol phosphate synthase subunit hishASC92_01315Not AvailablePositive300595 - 30125124153.9
1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomeraseASC92_01320Not AvailablePositive301315 - 30205525937.0
amino acid abc transporter substrate-binding proteinASC92_01325Not AvailableNegative302386 - 30330033115.0
c4-dicarboxylate abc transporterASC92_01330Not AvailableNegative303312 - 30461646371.3
d-hexose-6-phosphate mutarotaseASC92_01335Not AvailablePositive304786 - 30561930270.1
imidazole glycerol phosphate synthase subunit hisfASC92_01340Not AvailablePositive305642 - 30642727331.4
phosphoribosyl-amp cyclohydrolaseASC92_01345Not AvailablePositive306469 - 30685814807.5
phosphoribosyl-atp pyrophosphataseASC92_01350Not AvailablePositive306855 - 30724714021.4
hypothetical proteinASC92_01355Not AvailablePositive307261 - 30765014725.3
hit family hydrolaseASC92_01360Not AvailablePositive307640 - 30799913176.1

Displaying genes 261 – 270 of 5458 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.