Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax sp. Root411 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1013851 bp
Thymine Count
1009264 bp
Guanine Count
2025251 bp
Cytosine Count
2015464 bp
Genome Length
6064537 bp
Protein-coding Genes
5397 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nad-dependent succinate-semialdehyde dehydrogenase | ASC92_08630 | Not Available | Negative | 2964779 - 2966257 | 52594.2 |
| polyamine abc transporter permease | ASC92_08640 | Not Available | Negative | 2967488 - 2968306 | 29347.6 |
| polyamine abc transporter substrate-binding protein | ASC92_08645 | Not Available | Negative | 2968329 - 2969585 | 45495.5 |
| spermidine/putrescine abc transporter substrate-binding protein | ASC92_08650 | Not Available | Negative | 2969608 - 2970636 | 37439.8 |
| fe3+/spermidine/putrescine abc transporter atp-binding protein | ASC92_08655 | Not Available | Negative | 2970695 - 2971789 | 39920.3 |
| 4-aminobutyrate aminotransferase | ASC92_08660 | Not Available | Negative | 2971817 - 2973109 | 45328.5 |
| gntr family transcriptional regulator | ASC92_08665 | Not Available | Positive | 2973273 - 2974685 | 52222.2 |
| ornithine cyclodeaminase | ASC92_08670 | Not Available | Positive | 2974820 - 2975869 | 38056.7 |
| acetylpolyamine aminohydrolase | ASC92_08675 | Not Available | Positive | 2975877 - 2976917 | 37691.5 |
| hypothetical protein | ASC92_08680 | Not Available | Positive | 2977046 - 2978020 | 34713.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
