Variovorax sp. Root411

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Variovorax

Description

Variovorax sp. Root411 is characterized as a rod-shaped bacterium with a single replicon. This trait suggests a streamlined genetic architecture, potentially allowing for efficient replication and adaptation to its environment. The organism is cataloged under the accession number LMDW00000000.1, which serves as a reference point for its genetic and taxonomic information. The rod shape of Variovorax sp. Root411 may confer advantages in motility and surface adhesion, traits that are often crucial for bacteria in various ecological niches, particularly in soil and rhizosphere environments. The ability to thrive in these environments is essential for the bacterium's interactions with plants and other microorganisms, contributing to nutrient cycling and soil health. In summary, the simple structure of Variovorax sp. Root411, with its single replicon and rod shape, highlights its potential for adaptability in complex ecosystems. Such traits may play a significant role in its ecological interactions, particularly in supporting plant health and soil microbiome dynamics.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusVariovorax
SpeciesVariovorax sp. Root411
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Variovorax sp. Root411 contig_9, whole genome shotgun sequence.

Gene Summary

Adenine Count

1013851 bp

Thymine Count

1009264 bp

Guanine Count

2025251 bp

Cytosine Count

2015464 bp

Genome Length

6064537 bp

Protein-coding Genes

5397 genes

Non-Coding Genes

61 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
polysaccharide synthesis protein gtraASC92_08060Not AvailableNegative2832019 - 283242014299.5
glycosyl transferaseASC92_08065Not AvailableNegative2832417 - 283341235828.4
hypothetical proteinASC92_08070Not AvailableNegative2833409 - 283522066054.8
hypothetical proteinASC92_08080Not AvailableNegative2838209 - 283864615779.6
lysr family transcriptional regulatorASC92_08085Not AvailablePositive2838749 - 283967532962.7
ligand-binding protein sh3ASC92_08090Not AvailableNegative2839688 - 284039224688.3
5-methyltetrahydrofolate--homocysteine methyltransferaseASC92_08095Not AvailableNegative2840471 - 284152637528.6
histidinol-phosphate aminotransferaseASC92_08100Not AvailableNegative2841580 - 284274341026.5
n-formylglutamate deformylaseASC92_08105Not AvailableNegative2842764 - 284358229722.3
n-formimino-l-glutamate deiminaseASC92_08110Not AvailableNegative2843590 - 284497249704.7

Displaying genes 2551 – 2560 of 5458 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.