Pelomonas sp. Root405

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Sphaerotilaceae

Genus

Roseateles

Description

Pelomonas sp. Root405 is a Gram-negative, rod-shaped bacterium characterized by its single replicon. This organism is part of the broader diversity of microorganisms that contribute to various ecological niches, particularly in soil environments. The taxonomic classification of Pelomonas sp. Root405 can be traced through its accession number LMDU00000000.1, which provides a reference for genetic and genomic studies. The Gram-negative nature of this bacterium indicates that it possesses a thin peptidoglycan layer surrounded by an outer membrane, a characteristic that often influences its interactions with the environment and other organisms. The rod shape of Pelomonas sp. Root405 may confer certain advantages in motility and nutrient uptake, facilitating its adaptation to various habitats. Although specific ecological roles and interactions with other organisms are not detailed in the available data, the presence of such bacteria in soil is often associated with their involvement in nutrient cycling and potential plant growth promotion. Understanding the traits of Pelomonas sp. Root405 contributes to the broader knowledge of microbial diversity and ecology. The study of its characteristics can shed light on the functional roles of similar bacteria in soil ecosystems, emphasizing the importance of Gram-negative bacteria in maintaining environmental health and supporting plant life.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilySphaerotilaceae
GenusRoseateles
SpeciesPelomonas sp. Root405
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pelomonas sp. Root405 contig_9, whole genome shotgun sequence.

Gene Summary

Adenine Count

935841 bp

Thymine Count

935442 bp

Guanine Count

1969816 bp

Cytosine Count

1968779 bp

Genome Length

5809961 bp

Protein-coding Genes

5136 genes

Non-Coding Genes

59 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
dihydropyrimidine dehydrogenaseASC81_00340Q8ZNL7Negative72193 - 7350047142.6
dihydropyrimidine dehydrogenaseASC81_00345P09832Negative73493 - 7486348173.6
tetr family transcriptional regulatorASC81_00350Q8X4Z7Positive74962 - 7560924275.2
hypothetical proteinASC81_00355Not AvailablePositive75606 - 7604916190.3
hypothetical proteinASC81_00360Not AvailableNegative76015 - 7792868853.6
hypothetical proteinASC81_00365Not AvailableNegative78055 - 7864820377.3
rna polymerase subunit sigma-70ASC81_00370B3Q6P8Negative78639 - 7913618433.9
hypothetical proteinASC81_00375Not AvailablePositive79413 - 8050437363.8
hypothetical proteinASC81_00380Not AvailablePositive80614 - 8138423650.5
hypothetical proteinASC81_00385Not AvailableNegative81434 - 8223128122.3

Displaying genes 71 – 80 of 5195 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

299 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002583-(carbamoylamino)propanoateC4H7N2O3Chemical structure of 3-(carbamoylamino)propanoateNot available
Average131.112Da
Monoisotopic131.046215673Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000288aminohydroquinoneC6H7NO2Chemical structure of aminohydroquinoneNot available
Average125.127Da
Monoisotopic125.0476785Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da

Displaying 1–10 of 299 metabolites

Health Effects

No health effects information available for this bacterium.