Pseudomonas sp. Root401

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas sp. Root401 is a bacterial strain characterized by a single replicon, which provides insights into its genetic organization. The strain is cataloged under the accession number LMDO00000000.1. This accession serves as a unique identifier for its genomic data, facilitating further research and comparison with other strains within the Pseudomonas genus and beyond. Pseudomonas species are known for their ecological versatility and ability to thrive in various environments. They play significant roles in soil health, bioremediation, and plant growth promotion. The presence of Pseudomonas sp. Root401 in a specific ecological niche suggests its potential contributions to nutrient cycling and soil microbiome dynamics. Understanding the genetic makeup of Pseudomonas sp. Root401, albeit limited to the information provided, can help elucidate its metabolic capabilities and interactions within its environment. The single replicon structure may indicate a streamlined genomic architecture that can be advantageous for adaptability and survival in fluctuating conditions. Overall, the traits of Pseudomonas sp. Root401 underscore its relevance in ecological studies and highlight the importance of further investigation into its functional roles and potential applications in agriculture and environmental management.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas sp. Root401
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas sp. Root401
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas sp. Root401 contig_9, whole genome shotgun sequence.

Gene Summary

Adenine Count

1376254 bp

Thymine Count

1397912 bp

Guanine Count

2134329 bp

Cytosine Count

2120133 bp

Genome Length

7029547 bp

Protein-coding Genes

5931 genes

Non-Coding Genes

120 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
lysr family transcriptional regulatorASC85_00545Not AvailablePositive117047 - 11793133308.4
cytochrome cASC85_00550Not AvailablePositive118230 - 11860112793.3
fad-linked oxidoreductaseASC85_00555Not AvailablePositive118621 - 12001551266.9
hypothetical proteinASC85_00560Not AvailableNegative120261 - 12120534963.6
arac family transcriptional regulatorASC85_00565Not AvailablePositive121412 - 12245539084.3
lexa family transcriptional regulatorASC85_00570Not AvailablePositive122738 - 12335522436.3
cdp-6-deoxy-delta-3,4-glucoseen reductaseASC85_00575Not AvailablePositive123355 - 12398722124.7
dna repair nucleotidyltransferaseASC85_00580Not AvailablePositive123995 - 12541653350.1
dna polymeraseASC85_00585Not AvailablePositive125413 - 128490115341.0
histidine kinaseASC85_00590Not AvailablePositive128846 - 13090975794.5

Displaying genes 181 – 190 of 6051 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.