Massilia sp. Root351

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Oxalobacteraceae

Genus

Massilia

Description

Massilia sp. Root351 is a Gram-negative bacterium characterized by its rod shape. This organism possesses a single replicon, indicating a streamlined genetic structure that may contribute to its adaptability in various environments. The strain is cataloged under the accession LMDJ00000000.1, which provides a reference for researchers studying its genetic and phenotypic traits. As a member of the genus Massilia, Root351 may possess metabolic capabilities that allow it to thrive in diverse ecological niches. Members of this genus are often isolated from soil and plant-associated environments, suggesting that they may play a role in soil health and plant growth. The Gram-negative classification of Massilia sp. Root351 implies the presence of a distinctive outer membrane, which can impact its interactions with other microorganisms and its resistance to certain antibiotics. This trait may influence its ecological role, particularly in environments where competition for resources is significant. In summary, Massilia sp. Root351 is a rod-shaped, Gram-negative bacterium with a single replicon, known through the accession LMDJ00000000.1. Its classification and structural features suggest potential ecological functions, particularly in soil microbiomes, where it may contribute to nutrient cycling and plant interactions. Further research could elucidate its specific roles in these environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyOxalobacteraceae
GenusMassilia
SpeciesMassilia sp. Root351
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Massilia sp. Root351
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Massilia sp. Root351 contig_9, whole genome shotgun sequence.

Gene Summary

Adenine Count

1224765 bp

Thymine Count

1238946 bp

Guanine Count

2386680 bp

Cytosine Count

2356808 bp

Genome Length

7207331 bp

Protein-coding Genes

6042 genes

Non-Coding Genes

107 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Head-tail connector iiASD15_21945Not AvailableNegative6994546 - 699489011956.4
hypothetical proteinASD15_21950Not AvailableNegative6994877 - 699529914181.5
Putative head proteinASD15_21955P49861Negative6995342 - 699656544535.9
Putative prohead proteaseASD15_21960Not AvailableNegative6996570 - 699725624902.5
hypothetical proteinASD15_21965Not AvailableNegative6997246 - 69974256670.78
Portal proteinASD15_21970P49859Negative6997430 - 699868645851.2
Terminase gp2ASD15_21975P59217Negative6998716 - 700038362279.9
Hypothetical protein gp1ASD15_21980Not AvailableNegative7000428 - 700090117497.9
AttrNot AvailableNot AvailablePositive7014564 - 7014583Not Available
5s ribosomal rnaNot AvailableNot AvailablePositive201 - 378Not Available

Displaying genes 21 – 30 of 6149 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

325 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000234(3R)-hydroxybutanoate dimerC8H13O5Chemical structure of (3R)-hydroxybutanoate dimerNot available
Average189.188Da
Monoisotopic189.0768471Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002583-(carbamoylamino)propanoateC4H7N2O3Chemical structure of 3-(carbamoylamino)propanoateNot available
Average131.112Da
Monoisotopic131.046215673Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000288aminohydroquinoneC6H7NO2Chemical structure of aminohydroquinoneNot available
Average125.127Da
Monoisotopic125.0476785Da

Displaying 1–10 of 325 metabolites

Health Effects

No health effects information available for this bacterium.