Pseudomonas sp. Root329

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas sp. Root329 is characterized by having a single replicon. This trait suggests a streamlined genetic organization, which may contribute to its adaptability and efficiency in various environments. The strain is cataloged under the accession LMCV00000000.1, indicating that it has been sequenced and is available for study in genomic databases. As a member of the Pseudomonas genus, Root329 is likely to exhibit traits commonly associated with this group, such as metabolic versatility and the ability to thrive in diverse habitats. Pseudomonas species are known for their roles in bioremediation, plant growth promotion, and their interactions with various ecosystems. The significant ecological role of Pseudomonas species in nutrient cycling and as plant-associated bacteria highlights the potential of Pseudomonas sp. Root329 in agricultural contexts. Understanding the specific characteristics of Pseudomonas sp. Root329, particularly its genetic makeup and ecological interactions, can provide insights into its potential applications in agriculture and environmental management. Its single replicon may facilitate certain metabolic pathways, enabling it to adapt to specific environmental stresses or nutrient conditions. Therefore, further research on Pseudomonas sp. Root329 could unveil its potential benefits in sustainable agricultural practices or bioremediation efforts, emphasizing the importance of studying microbial diversity for ecological and agricultural advancements.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas sp. Root329
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas sp. Root329
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas sp. Root329 contig_9, whole genome shotgun sequence.

Gene Summary

Adenine Count

1365907 bp

Thymine Count

1386618 bp

Guanine Count

2008014 bp

Cytosine Count

1972593 bp

Genome Length

6733554 bp

Protein-coding Genes

5927 genes

Non-Coding Genes

131 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
amino acid abc transporter substrate-binding proteinASC74_09880Not AvailableNegative5815933 - 581668827873.9
imidazole glycerol phosphate synthase subunit hisfASC74_09885Not AvailableNegative5816767 - 581753727269.7
1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomeraseASC74_09890Not AvailableNegative5817547 - 581828425725.1
1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomeraseASC74_09895Not AvailableNegative5818327 - 581858410113.0
imidazole glycerol phosphate synthase subunit hishASC74_09900Not AvailableNegative5818585 - 581922323365.8
imidazoleglycerol-phosphate dehydrataseASC74_09905Not AvailableNegative5819223 - 581981621845.2
mfs transporterASC74_09910Not AvailableNegative5820090 - 582175459010.1
acetyltransferaseASC74_09915Not AvailablePositive5821975 - 582237914909.1
cell envelope biogenesis protein asmaASC74_09920Not AvailablePositive5822458 - 582468380073.1
a/g-specific adenine glycosylaseASC74_09925Not AvailablePositive5824680 - 582574739512.5

Displaying genes 5281 – 5290 of 6058 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.