Variovorax sp. Root318D1

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Variovorax

Description

Variovorax sp. Root318D1 is a rod-shaped bacterium notable for its unique ecological role. It possesses a single replicon, indicating a streamlined genomic structure that may be advantageous for its adaptability and survival in various environments. The accession number for this strain is LMCQ00000000.1, which provides a reference point for further genomic studies and analyses. The rod shape of Variovorax sp. Root318D1 suggests a potential for motility and colonization in diverse niches, which is characteristic of many bacteria within the Variovorax genus. This genus is known for its metabolic versatility, often participating in the degradation of complex organic compounds, thus playing an essential role in nutrient cycling. The ecological insight derived from the characteristics of Variovorax sp. Root318D1 highlights its potential in bioremediation, where its ability to break down pollutants can contribute to environmental cleanup efforts. The presence of a single replicon may also indicate efficient replication and regulation of essential genes, further enhancing its adaptability to changing environmental conditions. Thus, Variovorax sp. Root318D1 exemplifies the intricate relationship between microbial structure and function within ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusVariovorax
SpeciesVariovorax sp. Root318D1
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Variovorax sp. Root318D1 contig_9, whole genome shotgun sequence.

Gene Summary

Adenine Count

985297 bp

Thymine Count

979533 bp

Guanine Count

1898439 bp

Cytosine Count

1882261 bp

Genome Length

5745828 bp

Protein-coding Genes

5217 genes

Non-Coding Genes

49 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
adenosine deaminaseASC78_00060Q21T97Positive23565 - 2462939069.6
mfs transporterASC78_00065Not AvailableNegative24590 - 2588844710.5
lysr family transcriptional regulatorASC78_00070Not AvailablePositive25987 - 2693134103.3
hypothetical proteinASC78_00075Q2YKI6Positive27020 - 2812039841.8
lysr family transcriptional regulatorASC78_00080P76250Negative28121 - 2900231514.3
short-chain dehydrogenaseASC78_00085Not AvailablePositive29106 - 2971120416.6
hypothetical proteinASC78_00090Not AvailablePositive29708 - 3069134247.9
guanine deaminaseASC78_00095P76641Positive30769 - 3205546479.0
deoxycytidine triphosphate deaminaseASC78_00100C5CV58Positive32142 - 3270821192.2
metalloproteaseASC78_00105P64431Positive32860 - 3373831227.6

Displaying genes 11 – 20 of 5266 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

408 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000234(3R)-hydroxybutanoate dimerC8H13O5Chemical structure of (3R)-hydroxybutanoate dimerNot available
Average189.188Da
Monoisotopic189.0768471Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002654-formylbenzenesulfonateC7H5O4SChemical structure of 4-formylbenzenesulfonateNot available
Average185.17Da
Monoisotopic184.991403395Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da

Displaying 1–10 of 408 metabolites

Health Effects

No health effects information available for this bacterium.