Sphingomonas sp. Root241

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingomonadaceae

Genus

Sphingomonas

Description

Sphingomonas sp. Root241 is a rod-shaped bacterium characterized by the presence of flagella, which likely facilitates its motility in various environments. This organism is notable for having a single replicon, indicating a streamlined genomic structure that may contribute to its adaptability and efficiency in resource utilization. The accession number for Sphingomonas sp. Root241 is LMIV00000000.1, which serves as a reference for further genomic and taxonomic studies. The presence of flagella not only aids in movement but also suggests that Sphingomonas sp. Root241 may inhabit dynamic environments where mobility is advantageous, such as soil or rhizosphere ecosystems. Ecologically, members of the Sphingomonas genus are often associated with the degradation of complex organic compounds, including those derived from plant material. This trait aligns with the potential role of Sphingomonas sp. Root241 in nutrient cycling and its contribution to soil health. The ability to move toward nutrient sources may enhance its role in plant-microbe interactions, particularly in rhizosphere environments, where it could influence plant growth and health through mechanisms such as nutrient availability or biocontrol of phytopathogens. Overall, Sphingomonas sp. Root241 exemplifies the ecological significance of bacteria in soil ecosystems, particularly in their potential for bioremediation and symbiotic relationships with plants.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingomonadaceae
GenusSphingomonas
SpeciesSphingomonas sp. Root241
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Sphingomonas sp. Root241
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingomonas sp. Root241 contig_7, whole genome shotgun sequence.

Gene Summary

Adenine Count

713744 bp

Thymine Count

717710 bp

Guanine Count

1403927 bp

Cytosine Count

1376921 bp

Genome Length

4212502 bp

Protein-coding Genes

3715 genes

Non-Coding Genes

55 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinASE13_14695Not AvailableNegative3165028 - 31652407356.72
dead/deah box helicaseASE13_14700P25888Negative3165237 - 316666752301.0
hypothetical proteinASE13_14705Not AvailableNegative3166760 - 316721816702.5
hydroxyacid dehydrogenaseASE13_14710O23240Positive3167292 - 316874050248.2
multidrug transporterASE13_14715Not AvailablePositive3168789 - 316956829465.4
cytochrome bASE13_14720Not AvailablePositive3169568 - 317011320557.7
n-formylglutamate amidohydrolaseASE13_14725Not AvailableNegative3170304 - 317114929976.9
response regulatorASE13_14730Q2YIF7Positive3171265 - 317163914017.1
Trna-valNot AvailableNot AvailablePositive3171700 - 3171774Not Available
monooxygenaseASE13_14740Not AvailableNegative3171947 - 317299338514.0

Displaying genes 2911 – 2920 of 3770 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

263 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0000430hercynineC9H15N3O2Chemical structure of hercynineNot available
Average197.238Da
Monoisotopic197.1164267Da
BASm0000433malonateC3H2O4Chemical structure of malonateNot available
Average102.0456Da
Monoisotopic101.9953086Da

Displaying 1–10 of 263 metabolites

Health Effects

No health effects information available for this bacterium.