Sphingomonas sp. Root241

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingomonadaceae

Genus

Sphingomonas

Description

Sphingomonas sp. Root241 is a rod-shaped bacterium characterized by the presence of flagella, which likely facilitates its motility in various environments. This organism is notable for having a single replicon, indicating a streamlined genomic structure that may contribute to its adaptability and efficiency in resource utilization. The accession number for Sphingomonas sp. Root241 is LMIV00000000.1, which serves as a reference for further genomic and taxonomic studies. The presence of flagella not only aids in movement but also suggests that Sphingomonas sp. Root241 may inhabit dynamic environments where mobility is advantageous, such as soil or rhizosphere ecosystems. Ecologically, members of the Sphingomonas genus are often associated with the degradation of complex organic compounds, including those derived from plant material. This trait aligns with the potential role of Sphingomonas sp. Root241 in nutrient cycling and its contribution to soil health. The ability to move toward nutrient sources may enhance its role in plant-microbe interactions, particularly in rhizosphere environments, where it could influence plant growth and health through mechanisms such as nutrient availability or biocontrol of phytopathogens. Overall, Sphingomonas sp. Root241 exemplifies the ecological significance of bacteria in soil ecosystems, particularly in their potential for bioremediation and symbiotic relationships with plants.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingomonadaceae
GenusSphingomonas
SpeciesSphingomonas sp. Root241
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Sphingomonas sp. Root241
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingomonas sp. Root241 contig_7, whole genome shotgun sequence.

Gene Summary

Adenine Count

713744 bp

Thymine Count

717710 bp

Guanine Count

1403927 bp

Cytosine Count

1376921 bp

Genome Length

4212502 bp

Protein-coding Genes

3715 genes

Non-Coding Genes

55 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
uroporphyrinogen-iii synthaseASE13_11370Not AvailableNegative2466534 - 246720222804.3
porphobilinogen deaminaseASE13_11375Q1GP41Negative2467199 - 246811331963.8
trna threonylcarbamoyl adenosine modification protein tsadASE13_11380Q1GP42Positive2468151 - 246917634942.3
glycerol-3-phosphate dehydrogenaseASE13_11385Q1GP43Positive2469187 - 247016432964.6
hypothetical proteinASE13_11390Not AvailablePositive2470176 - 247069718921.7
sam-dependent methyltransferaseASE13_11395Q8P4G1Positive2470860 - 247214945135.4
ribulose phosphate epimeraseASE13_11400O34557Positive2472209 - 247286823074.9
heparinaseASE13_11405Not AvailablePositive2472865 - 247459862904.9
phosphoribosylaminoimidazolecarboxamide formyltransferaseASE13_11410A7HSQ6Positive2474638 - 247620054491.9
2-oxoisovalerate dehydrogenaseASE13_11415Q9I1M2Positive2476325 - 247759046240.4

Displaying genes 2251 – 2260 of 3770 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

263 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0000430hercynineC9H15N3O2Chemical structure of hercynineNot available
Average197.238Da
Monoisotopic197.1164267Da
BASm0000433malonateC3H2O4Chemical structure of malonateNot available
Average102.0456Da
Monoisotopic101.9953086Da

Displaying 1–10 of 263 metabolites

Health Effects

No health effects information available for this bacterium.