Sphingopyxis sp. Root214

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingopyxidaceae

Genus

Sphingopyxis

Description

Sphingopyxis sp. Root214 is a rod-shaped bacterium characterized by having a single replicon. This trait indicates a streamlined genetic organization, which may contribute to its adaptability and efficiency in various environments. The organism is cataloged under the accession number LMIG00000000.1, which provides a reference for its genomic data and supports further research and identification. The rod shape of Sphingopyxis sp. Root214 is common among many bacteria and can be indicative of its ecological niche and functional capabilities. Rod-shaped bacteria often exhibit a high surface area-to-volume ratio, which can enhance nutrient uptake and facilitate survival in diverse environments, including soil and aquatic ecosystems. In terms of ecological insights, the presence of Sphingopyxis sp. Root214 suggests a potential role in biogeochemical cycles, particularly in the degradation of organic compounds or pollutants. Members of the Sphingopyxis genus are known for their ability to metabolize various organic substrates, which could imply that Root214 may play a role in nutrient cycling or bioremediation processes. This highlights the importance of studying such organisms, as they may contribute to the maintenance of ecosystem health and the degradation of environmental contaminants.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingopyxidaceae
GenusSphingopyxis
SpeciesSphingopyxis sp. Root214
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingopyxis sp. Root214 contig_7, whole genome shotgun sequence.

Gene Summary

Adenine Count

835640 bp

Thymine Count

840677 bp

Guanine Count

1526546 bp

Cytosine Count

1521493 bp

Genome Length

4724829 bp

Protein-coding Genes

4281 genes

Non-Coding Genes

62 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
2-keto-4-pentenoate hydrataseASE06_21160Not AvailableNegative4546098 - 454709935474.9
hypothetical proteinASE06_21165Not AvailableNegative4547157 - 454757014526.5
histidine kinaseASE06_21170Not AvailablePositive4547720 - 454895244456.5
cold-shock proteinASE06_21175Not AvailablePositive4549132 - 45493387423.69
translation initiation factor if-1ASE06_21180Not AvailablePositive4549343 - 45496069754.84
hypothetical proteinASE06_21185Not AvailablePositive4549833 - 45500457614.81
omega amino acid--pyruvate aminotransferaseASE06_21190Not AvailableNegative4550058 - 455137446810.1
glutamine synthetaseASE06_21195Not AvailablePositive4551631 - 455297750033.7
fad-dependent oxidoreductaseASE06_21200Not AvailablePositive4552992 - 455426045673.4
aminotransferaseASE06_21205Not AvailablePositive4554257 - 455560047163.8

Displaying genes 4171 – 4180 of 4343 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.