Sphingopyxis sp. Root214

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingopyxidaceae

Genus

Sphingopyxis

Description

Sphingopyxis sp. Root214 is a rod-shaped bacterium characterized by having a single replicon. This trait indicates a streamlined genetic organization, which may contribute to its adaptability and efficiency in various environments. The organism is cataloged under the accession number LMIG00000000.1, which provides a reference for its genomic data and supports further research and identification. The rod shape of Sphingopyxis sp. Root214 is common among many bacteria and can be indicative of its ecological niche and functional capabilities. Rod-shaped bacteria often exhibit a high surface area-to-volume ratio, which can enhance nutrient uptake and facilitate survival in diverse environments, including soil and aquatic ecosystems. In terms of ecological insights, the presence of Sphingopyxis sp. Root214 suggests a potential role in biogeochemical cycles, particularly in the degradation of organic compounds or pollutants. Members of the Sphingopyxis genus are known for their ability to metabolize various organic substrates, which could imply that Root214 may play a role in nutrient cycling or bioremediation processes. This highlights the importance of studying such organisms, as they may contribute to the maintenance of ecosystem health and the degradation of environmental contaminants.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingopyxidaceae
GenusSphingopyxis
SpeciesSphingopyxis sp. Root214
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingopyxis sp. Root214 contig_7, whole genome shotgun sequence.

Gene Summary

Adenine Count

835640 bp

Thymine Count

840677 bp

Guanine Count

1526546 bp

Cytosine Count

1521493 bp

Genome Length

4724829 bp

Protein-coding Genes

4281 genes

Non-Coding Genes

62 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
protein tyrosine phosphataseASE06_20455Not AvailablePositive4394132 - 439491128258.6
xaa-pro dipeptidaseASE06_20460Not AvailableNegative4394915 - 439624947239.3
hypothetical proteinASE06_20465Not AvailableNegative4396324 - 439690520741.4
hypothetical proteinASE06_20470Not AvailableNegative4396941 - 439753721456.1
dihydrolipoamide dehydrogenaseASE06_20475Not AvailableNegative4397559 - 439895649358.9
branched-chain alpha-keto acid dehydrogenase subunit e2ASE06_20480Not AvailableNegative4398958 - 440026544274.6
universal stress proteinASE06_20485Not AvailablePositive4400439 - 440089415320.5
hypothetical proteinASE06_20490Not AvailableNegative4400891 - 440128012881.3
xre family transcriptional regulatorASE06_20495Not AvailablePositive4401398 - 440218028504.3
ribonuclease rASE06_20500Not AvailableNegative4402262 - 440458084743.7

Displaying genes 4031 – 4040 of 4343 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.