Hydrogenophaga sp. Root209

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Hydrogenophaga

Description

Hydrogenophaga sp. Root209 is a Gram-negative bacterium characterized by its rod shape. It possesses a single replicon, indicative of a streamlined genetic organization that is common in many bacterial species. The accession number associated with Hydrogenophaga sp. Root209 is LMIE00000000.1, which provides a reference point for genomic data and further research. As a member of the genus Hydrogenophaga, this bacterium is typically associated with environments where hydrogen and other reduced compounds are present, suggesting a role in biogeochemical cycles. The capacity to utilize hydrogen as an energy source may enhance its ecological significance, particularly in nutrient cycling and the degradation of organic materials in its environment. The streamlined nature of its genetic makeup, coupled with its metabolic capabilities, positions Hydrogenophaga sp. Root209 as a potential player in the microbial community dynamics, especially in habitats where hydrogen is abundant. This can have implications for understanding microbial interactions and energy flows in various ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusHydrogenophaga
SpeciesHydrogenophaga sp. Root209
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Hydrogenophaga sp. Root209 contig_9, whole genome shotgun

Gene Summary

Adenine Count

935254 bp

Thymine Count

916376 bp

Guanine Count

1710494 bp

Cytosine Count

1744745 bp

Genome Length

5307743 bp

Protein-coding Genes

4851 genes

Non-Coding Genes

56 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
lysr family transcriptional regulatorASE11_23305Not AvailableNegative1568151 - 156905032480.8
mfs transporterASE11_23310Not AvailablePositive1569185 - 157059147462.4
gntr family transcriptional regulatorASE11_23315Not AvailablePositive1570757 - 157151827719.3
3-hydroxyisobutyrate dehydrogenaseASE11_23320Not AvailablePositive1571515 - 157243831465.9
hypothetical proteinASE11_23325Not AvailablePositive1572435 - 157371243444.2
aldolaseASE11_23330Not AvailablePositive1573709 - 157438924467.2
hydroxypyruvate isomeraseASE11_23335Not AvailablePositive1574484 - 157528128901.4
nad-dependent epimeraseASE11_23340Not AvailablePositive1575278 - 157631236294.8
c4-dicarboxylate abc transporter substrate-binding proteinASE11_23345Not AvailablePositive1576374 - 157745638843.6
c4-dicarboxylate abc transporter permeaseASE11_23350Not AvailablePositive1577624 - 157811518231.8

Displaying genes 1451 – 1460 of 4907 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.