Duganella sp. Root198D2

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Oxalobacteraceae

Genus

Duganella

Description

Duganella sp. Root198D2 is a Gram-negative bacterium characterized by its rod-shaped morphology. This species contains a single replicon, indicating a streamlined genetic structure that may contribute to its adaptability and efficiency in various environments. The accession number for this organism is LMIC00000000.1, which serves as a reference for genetic and genomic studies. This information is crucial for researchers interested in the phylogenetic classification and functional analysis of Duganella sp. Root198D2. In an ecological context, Gram-negative bacteria like Duganella sp. are often associated with diverse environments, including soil and plant roots, where they can play significant roles in nutrient cycling and plant growth promotion. Their capacity to engage in various biochemical processes makes them important in agricultural and ecological systems. Understanding the specific traits and genetic makeup of Duganella sp. Root198D2 could enhance our knowledge of its ecological functions and potential applications in biotechnology or environmental management.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyOxalobacteraceae
GenusDuganella
SpeciesDuganella sp. Root198D2
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Duganella sp. Root198D2 contig_9, whole genome shotgun sequence.

Gene Summary

Adenine Count

1235539 bp

Thymine Count

1228720 bp

Guanine Count

2046516 bp

Cytosine Count

2031332 bp

Genome Length

6542676 bp

Protein-coding Genes

5756 genes

Non-Coding Genes

78 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
abc transporter permeaseASE26_00040Not AvailablePositive4879 - 580832558.4
abc transporter atp-binding proteinASE26_00045Not AvailablePositive5822 - 703342781.1
abc transporter atp-binding proteinASE26_00050P21629Positive7045 - 781527973.0
abc transporter atp-binding proteinASE26_00055Not AvailablePositive7815 - 853725687.8
serine dehydrataseASE26_00060O59791Negative8553 - 950633942.8
ornithine cyclodeaminaseASE26_00065A1B8Z0Negative9519 - 1051134514.0
dna-binding proteinASE26_00070Q9HXE2Negative10501 - 1113322513.1
phasin (pha-granule associated protein)ASE26_00075Not AvailableNegative11301 - 1185519370.4
peptide abc transporter atp-binding proteinASE26_00080Not AvailablePositive12088 - 1294830796.2
nitrobenzoate reductaseASE26_00085Q5XW77Positive12958 - 1365325948.1

Displaying genes 11 – 20 of 5834 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

295 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000234(3R)-hydroxybutanoate dimerC8H13O5Chemical structure of (3R)-hydroxybutanoate dimerNot available
Average189.188Da
Monoisotopic189.0768471Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002583-(carbamoylamino)propanoateC4H7N2O3Chemical structure of 3-(carbamoylamino)propanoateNot available
Average131.112Da
Monoisotopic131.046215673Da
BASm0000288aminohydroquinoneC6H7NO2Chemical structure of aminohydroquinoneNot available
Average125.127Da
Monoisotopic125.0476785Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000400(R)-10-hydroxyoctadecanoateC18H35O3Chemical structure of (R)-10-hydroxyoctadecanoateNot available
Average299.476Da
Monoisotopic299.2591686Da

Displaying 1–10 of 295 metabolites

Health Effects

No health effects information available for this bacterium.