Noviherbaspirillum sp. Root189

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Oxalobacteraceae

Genus

Noviherbaspirillum

Description

Noviherbaspirillum sp. Root189 is a Gram-negative bacterium characterized by its rod-shaped morphology. It possesses a single replicon, which is a notable feature in its genetic structure. The organism is cataloged under the accession number LMHZ00000000.1, which serves as a unique identifier for its genomic data. The Gram-negative classification indicates that Noviherbaspirillum sp. Root189 has a thin peptidoglycan layer surrounded by an outer membrane, a feature that can influence its interaction with the environment and susceptibility to antibiotics. The rod shape may also provide advantages in terms of motility and colonization in various habitats. Understanding the genetic and structural features of Noviherbaspirillum sp. Root189 is essential for exploring its ecological roles. As a bacterium, it may play significant roles in nutrient cycling and soil health, particularly in rhizosphere environments where plant roots provide organic compounds that can sustain microbial communities. This ecological insight highlights the importance of studying microorganisms like Noviherbaspirillum sp. Root189 to uncover their contributions to soil ecosystems and plant health.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyOxalobacteraceae
GenusNoviherbaspirillum
SpeciesNoviherbaspirillum sp. Root189
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Noviherbaspirillum sp. Root189 contig_90, whole genome shotgun

Gene Summary

Adenine Count

1325488 bp

Thymine Count

1329832 bp

Guanine Count

1741655 bp

Cytosine Count

1750235 bp

Genome Length

6147767 bp

Protein-coding Genes

5305 genes

Non-Coding Genes

77 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
toxin hipaASE07_12405P23874Negative560250 - 56159349727.3
iclr family transcriptional regulatorASE07_12415Not AvailableNegative562484 - 56327828131.6
abc transporter substrate-binding proteinASE07_12420Q9HU18Positive563445 - 56445537121.8
3-dehydroquinate dehydrataseASE07_12425A4J3D2Positive564490 - 56494216277.7
c4-dicarboxylate abc transporter permeaseASE07_12430P44994Positive565034 - 56554618791.3
l-dehydroascorbate transporter large permease subunitASE07_12435Not AvailablePositive565543 - 56682044423.1
nad-dependent dehydrataseASE07_12440A0A221J5X3Negative566948 - 56801539435.0
iclr family transcriptional regulatorASE07_12445P37671Negative568306 - 56912729212.3
abc transporter substrate-binding proteinASE07_12450Not AvailablePositive569275 - 57030337870.0
hypothetical proteinASE07_12455Not AvailablePositive570312 - 57099525219.2

Displaying genes 541 – 550 of 5382 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

346 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000234(3R)-hydroxybutanoate dimerC8H13O5Chemical structure of (3R)-hydroxybutanoate dimerNot available
Average189.188Da
Monoisotopic189.0768471Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002634-(hydroxymethyl)benzenesulfonateC7H7O4SChemical structure of 4-(hydroxymethyl)benzenesulfonateNot available
Average187.19Da
Monoisotopic187.007053459Da
BASm0000288aminohydroquinoneC6H7NO2Chemical structure of aminohydroquinoneNot available
Average125.127Da
Monoisotopic125.0476785Da
BASm0000315acetylpyruvateC5H6O4Chemical structure of acetylpyruvateNot available
Average130.099Da
Monoisotopic130.0266087Da

Displaying 1–10 of 346 metabolites

Health Effects

No health effects information available for this bacterium.