Microbacterium sp. Root180

Rod

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Micrococcales

Family

Microbacteriaceae

Genus

Microbacterium

Description

Microbacterium sp. Root180 is characterized by its rod-shaped morphology and possesses a single replicon. This organism is cataloged under the accession number LMHS00000000.1, which provides a reference for further studies and analysis. Microbacterium species are known to inhabit various environments, including soil and plant roots, where they can play significant roles in nutrient cycling and plant health. The presence of Microbacterium sp. Root180 in such environments suggests its potential involvement in symbiotic relationships with plants, possibly aiding in nutrient uptake or providing other beneficial effects. The rod shape of Microbacterium sp. Root180 is typical of many bacteria in the Microbacterium genus, which often exhibit similar morphological traits. This shape may contribute to its ecological versatility, allowing it to colonize various niches effectively. In summary, Microbacterium sp. Root180, with its rod shape and single replicon, stands as a representative of its genus, potentially contributing to ecological processes in its environment. Its exact role in these interactions, while not explicitly detailed, underscores the importance of studying such microorganisms to better understand their impact on ecosystems and their potential applications in agriculture or biotechnology.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyMicrobacteriaceae
GenusMicrobacterium
SpeciesMicrobacterium sp. Root180
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Microbacterium sp. Root180 contig_5, whole genome shotgun

Gene Summary

Adenine Count

503692 bp

Thymine Count

500616 bp

Guanine Count

1174327 bp

Cytosine Count

1169052 bp

Genome Length

3347721 bp

Protein-coding Genes

3036 genes

Non-Coding Genes

51 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
peptide abc transporter atp-binding proteinASD93_01675P27675Negative368572 - 36930626866.2
abc transporter permeaseASD93_01680O34606Negative369303 - 37014830923.3
abc transporter substrate-binding proteinASD93_01685Not AvailableNegative370177 - 37103729736.4
hypothetical proteinASD93_01690Not AvailableNegative371215 - 3714548195.11
rna polymerase subunit sigma-70ASD93_01695Not AvailableNegative371567 - 37262537947.1
hypothetical proteinASD93_01700Not AvailableNegative372625 - 37300513350.6
hypothetical proteinASD93_01705Not AvailableNegative373080 - 37365220530.1
transglutaminaseASD93_01710Not AvailableNegative373703 - 37450027961.0
2-dehydro-3-deoxyglucarate aldolaseASD93_01715B5FR34Negative374583 - 37538327256.7
2-oxo-hepta-3-ene-1,7-dioate hydrataseASD93_01720P42270Negative375368 - 37615327992.4

Displaying genes 331 – 340 of 3087 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

241 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000275keto-D-sorboseC6H12O6Chemical structure of keto-D-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da

Displaying 1–10 of 241 metabolites

Health Effects

No health effects information available for this bacterium.