Microbacterium sp. Root1433D1

Rod

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Micrococcales

Family

Microbacteriaceae

Genus

Microbacterium

Description

Microbacterium sp. Root1433D1 is a rod-shaped bacterium notable for its single replicon, which suggests a streamlined genetic organization. This organism has been cataloged under the accession number LMFN00000000.1, providing a reference for further research and characterization. Microbacterium species are typically recognized for their diverse metabolic capabilities and their presence in various environments, including soil and plant-associated niches. The specific ecological role of Microbacterium sp. Root1433D1 is not detailed; however, its classification within the Microbacterium genus implies potential interactions with plant roots, where such bacteria may contribute to soil health and nutrient cycling. The presence of rod-shaped bacteria like Microbacterium sp. Root1433D1 in root ecosystems can be indicative of their role in promoting plant growth, possibly through mechanisms such as nitrogen fixation or the degradation of organic matter. Understanding the traits of this specific strain may provide insights into its potential applications in agriculture or bioremediation, particularly in enhancing soil microbiome diversity and functionality. Overall, the characterization of Microbacterium sp. Root1433D1 emphasizes the importance of microbial diversity in maintaining ecological balance and promoting plant health.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyMicrobacteriaceae
GenusMicrobacterium
SpeciesMicrobacterium sp. Root1433D1
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Microbacterium sp. Root1433D1 contig_6, whole genome shotgun

Gene Summary

Adenine Count

561705 bp

Thymine Count

560513 bp

Guanine Count

1221461 bp

Cytosine Count

1220250 bp

Genome Length

3563959 bp

Protein-coding Genes

3337 genes

Non-Coding Genes

50 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinASD13_00060Not AvailableNegative14502 - 1504119590.9
biotin--acetyl-coa-carboxylase ligaseASD13_00065I6YFP0Negative15092 - 1586226232.4
hypothetical proteinASD13_00070Not AvailableNegative15865 - 1714848645.1
glycosyl transferase family 2ASD13_00075P33691Positive17316 - 1834136779.6
glycosyl/glycerophosphate transferaseASD13_00080P13485Negative18357 - 1979353137.1
glycosyl/glycerophosphate transferaseASD13_00085Q2G1C1Negative19790 - 2104344612.2
serine proteaseASD13_00090O53896Negative21092 - 2272652784.9
aminotransferaseASD13_00095P9WPZ4Positive22825 - 2402742005.9
hydrolaseASD13_00100P58054Negative24065 - 2489529703.3
Trna-metNot AvailableNot AvailablePositive24991 - 25067Not Available

Displaying genes 11 – 20 of 3387 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

232 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000275keto-D-sorboseC6H12O6Chemical structure of keto-D-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da

Displaying 1–10 of 232 metabolites

Health Effects

No health effects information available for this bacterium.