Streptomyces sp. Root1310

Gram-negativeRodMotileAerobe

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Kitasatosporales

Family

Streptomycetaceae

Genus

Streptomyces

Description

Streptomyces sp. Root1310 is a mesophilic, aerobic, and heterotrophic bacterium characterized by its rod shape and single-cell arrangement. This organism is classified as Gram-negative, indicating the presence of a thin peptidoglycan layer and an outer membrane. Streptomyces sp. Root1310 is mobile, possessing flagella that facilitate its movement in various environments. This bacterium exhibits a free-living biotic relationship, allowing it to thrive independently in multiple habitats. The organism is equipped with two replicons, which may contribute to its genetic diversity and adaptability in different ecological niches. The presence of two membranes further supports its classification as a Gram-negative bacterium, which is typical for many species within the Streptomyces genus. The ability of Streptomyces sp. Root1310 to utilize a variety of organic substrates as a heterotroph positions it as a significant player in nutrient cycling within its ecosystem. The organism's adaptability to diverse habitats and its aerobic nature suggest a role in soil health and the decomposition of organic matter. This capability may enhance soil fertility and promote plant growth, reflecting the ecological importance of Streptomyces species in their environments. Accession numbers NZ_LMEQ01000012.1 and LMEQ00000000.1 provide reference points for further genomic and functional studies of this organism, contributing to our understanding of its role in microbiology and ecology.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderKitasatosporales
FamilyStreptomycetaceae
GenusStreptomyces
SpeciesStreptomyces sp. Root1310
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Streptomyces sp. Root1310
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceHeterotroph
PathogenicityNot Available

Genome Summary

Streptomyces sp. Root1310 contig_9, whole genome shotgun sequence.

Gene Summary

Adenine Count

1353018 bp

Thymine Count

1364953 bp

Guanine Count

3425158 bp

Cytosine Count

3396290 bp

Genome Length

9540101 bp

Protein-coding Genes

7925 genes

Non-Coding Genes

92 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
carboxymuconolactone decarboxylase family proteinASD48_RS20025P96684Negative413329 - 41380216808.1
carboxymuconolactone decarboxylase family proteinASD48_RS20030P96684Negative413799 - 41431718953.6
mocr-like pyridoxine biosynthesis transcription factor pdxrASD48_RS20035O07578Positive414365 - 41580750713.5
carboxymuconolactone decarboxylase family proteinASD48_RS20040P96684Positive415838 - 41632317269.6
aminotransferase class ivASD48_RS20045Not AvailableNegative416503 - 41730629551.6
fad-dependent monooxygenaseASD48_RS20050A0R1T4Negative417317 - 41849541518.6
class i adenylate-forming enzyme family proteinASD48_RS20055A0A0K2JLU1Negative418492 - 42007558276.5
amp-binding proteinASD48_RS20060Q53005Negative420224 - 42186457072.9
chorismate-binding proteinASD48_RS20065F2RB79Negative421924 - 42420381714.8
putative antibiotic biosynthesis monooxygenaseASD48_RS20070P37372Negative424235 - 42481321780.5

Displaying genes 8401 – 8410 of 9029 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

473 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm0000400(R)-10-hydroxyoctadecanoateC18H35O3Chemical structure of (R)-10-hydroxyoctadecanoateNot available
Average299.476Da
Monoisotopic299.2591686Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da

Displaying 1–10 of 473 metabolites

Health Effects

No health effects information available for this bacterium.