Streptomyces sp. Root1310

Gram-negativeRodMotileAerobe

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Kitasatosporales

Family

Streptomycetaceae

Genus

Streptomyces

Description

Streptomyces sp. Root1310 is a mesophilic, aerobic, and heterotrophic bacterium characterized by its rod shape and single-cell arrangement. This organism is classified as Gram-negative, indicating the presence of a thin peptidoglycan layer and an outer membrane. Streptomyces sp. Root1310 is mobile, possessing flagella that facilitate its movement in various environments. This bacterium exhibits a free-living biotic relationship, allowing it to thrive independently in multiple habitats. The organism is equipped with two replicons, which may contribute to its genetic diversity and adaptability in different ecological niches. The presence of two membranes further supports its classification as a Gram-negative bacterium, which is typical for many species within the Streptomyces genus. The ability of Streptomyces sp. Root1310 to utilize a variety of organic substrates as a heterotroph positions it as a significant player in nutrient cycling within its ecosystem. The organism's adaptability to diverse habitats and its aerobic nature suggest a role in soil health and the decomposition of organic matter. This capability may enhance soil fertility and promote plant growth, reflecting the ecological importance of Streptomyces species in their environments. Accession numbers NZ_LMEQ01000012.1 and LMEQ00000000.1 provide reference points for further genomic and functional studies of this organism, contributing to our understanding of its role in microbiology and ecology.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderKitasatosporales
FamilyStreptomycetaceae
GenusStreptomyces
SpeciesStreptomyces sp. Root1310
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Streptomyces sp. Root1310
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceHeterotroph
PathogenicityNot Available

Genome Summary

Streptomyces sp. Root1310 contig_9, whole genome shotgun sequence.

Gene Summary

Adenine Count

1353018 bp

Thymine Count

1364953 bp

Guanine Count

3425158 bp

Cytosine Count

3396290 bp

Genome Length

9540101 bp

Protein-coding Genes

7925 genes

Non-Coding Genes

92 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
abc transporter permeaseASD48_30555Not AvailableNegative9302157 - 930305330936.2
abc transporter substrate-binding proteinASD48_30560Not AvailableNegative9303050 - 930421040406.2
gntr family transcriptional regulatorASD48_30565Not AvailablePositive9304422 - 930516227075.1
asnc family transcriptional regulatorASD48_30570Not AvailableNegative9305190 - 930564216540.8
amino acid permeaseASD48_30575O07576Negative9305653 - 930712851431.6
inosine-5-monophosphate dehydrogenaseASD48_30580A0QYE8Negative9307456 - 930889550506.5
hypothetical proteinASD48_30585Not AvailableNegative9309027 - 930933210897.8
ribonuclease nASD48_30590P00650Negative9309329 - 930974814980.9
transcriptional regulatorASD48_30595P39356Negative9309799 - 931084236859.8
ribulose phosphate epimeraseASD48_30600Q9L0Z5Negative9310933 - 931161924221.9

Displaying genes 7801 – 7810 of 9029 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

473 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm0000400(R)-10-hydroxyoctadecanoateC18H35O3Chemical structure of (R)-10-hydroxyoctadecanoateNot available
Average299.476Da
Monoisotopic299.2591686Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da

Displaying 1–10 of 473 metabolites

Health Effects

No health effects information available for this bacterium.