Pelomonas sp. Root1217

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Sphaerotilaceae

Genus

Roseateles

Description

Pelomonas sp. Root1217 is a Gram-negative, rod-shaped bacterium. It possesses a single replicon, indicating a streamlined genetic structure that is often characteristic of bacteria adapted to specific ecological niches. The accession number for this organism is LMDC00000000.1, which provides a unique identifier for genomic data and further research. The classification as Gram-negative suggests that Pelomonas sp. Root1217 has a thinner peptidoglycan layer in its cell wall, surrounded by an outer membrane containing lipopolysaccharides. This structural feature can influence the bacterium's interactions with its environment, including its susceptibility to antibiotics and its ability to form biofilms. Ecologically, the unique traits of Pelomonas sp. Root1217 may suggest a specialization to particular environments, potentially contributing to nutrient cycling or interactions with plant roots, given that many members of the Pelomonas genus are associated with soil. The presence of a single replicon may also indicate a tightly regulated genetic system, which can be advantageous for survival in variable environments. Understanding the specific traits of Pelomonas sp. Root1217 may provide insights into its ecological roles and interactions within microbial communities, particularly in soil ecosystems. Further research into its metabolic capabilities and ecological functions could enhance our knowledge of its contribution to soil health and plant growth.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilySphaerotilaceae
GenusRoseateles
SpeciesPelomonas sp. Root1217
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pelomonas sp. Root1217 contig_9, whole genome shotgun sequence.

Gene Summary

Adenine Count

1086759 bp

Thymine Count

1080061 bp

Guanine Count

2239265 bp

Cytosine Count

2243224 bp

Genome Length

6649903 bp

Protein-coding Genes

5745 genes

Non-Coding Genes

60 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
2-deoxyribose-5-phosphate aldolaseASC95_20425Not AvailableNegative5044672 - 504543625620.5
purine nucleoside phosphorylaseASC95_20430Not AvailableNegative5045433 - 504626929519.7
cytidine deaminaseASC95_20435Not AvailableNegative5046278 - 504668814717.8
sugar abc transporter permeaseASC95_20440Not AvailableNegative5046937 - 504790233371.5
sugar abc transporter permeaseASC95_20445Not AvailableNegative5047902 - 504900538098.7
heme abc transporter atp-binding proteinASC95_20450Not AvailableNegative5049100 - 505062954837.7
hypothetical proteinASC95_20455Not AvailableNegative5050635 - 505161834844.1
mate family efflux transporterASC95_20460Not AvailableNegative5051700 - 505304947873.1
aconitate hydrataseASC95_20465Not AvailablePositive5053127 - 505583597492.3
hypothetical proteinASC95_20470Not AvailablePositive5056016 - 505708638209.9

Displaying genes 4371 – 4380 of 5805 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.