Pelomonas sp. Root1217

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Sphaerotilaceae

Genus

Roseateles

Description

Pelomonas sp. Root1217 is a Gram-negative, rod-shaped bacterium. It possesses a single replicon, indicating a streamlined genetic structure that is often characteristic of bacteria adapted to specific ecological niches. The accession number for this organism is LMDC00000000.1, which provides a unique identifier for genomic data and further research. The classification as Gram-negative suggests that Pelomonas sp. Root1217 has a thinner peptidoglycan layer in its cell wall, surrounded by an outer membrane containing lipopolysaccharides. This structural feature can influence the bacterium's interactions with its environment, including its susceptibility to antibiotics and its ability to form biofilms. Ecologically, the unique traits of Pelomonas sp. Root1217 may suggest a specialization to particular environments, potentially contributing to nutrient cycling or interactions with plant roots, given that many members of the Pelomonas genus are associated with soil. The presence of a single replicon may also indicate a tightly regulated genetic system, which can be advantageous for survival in variable environments. Understanding the specific traits of Pelomonas sp. Root1217 may provide insights into its ecological roles and interactions within microbial communities, particularly in soil ecosystems. Further research into its metabolic capabilities and ecological functions could enhance our knowledge of its contribution to soil health and plant growth.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilySphaerotilaceae
GenusRoseateles
SpeciesPelomonas sp. Root1217
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pelomonas sp. Root1217 contig_9, whole genome shotgun sequence.

Gene Summary

Adenine Count

1086759 bp

Thymine Count

1080061 bp

Guanine Count

2239265 bp

Cytosine Count

2243224 bp

Genome Length

6649903 bp

Protein-coding Genes

5745 genes

Non-Coding Genes

60 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
integration host factor subunit betaASC95_17755Not AvailableNegative4407526 - 440782511049.4
30s ribosomal protein s1ASC95_17760Not AvailableNegative4407936 - 440961861437.2
cytidylate kinaseASC95_17765Not AvailableNegative4409820 - 441182071001.6
prephenate dehydrogenaseASC95_17770Not AvailableNegative4411820 - 441271631555.2
chorismate mutaseASC95_17775Not AvailableNegative4412721 - 441381839902.9
3-phosphoserine/phosphohydroxythreonine aminotransferaseASC95_17780Not AvailableNegative4413811 - 441490239480.3
hypothetical proteinASC95_17785Not AvailableNegative4414917 - 441550120290.8
dna gyrase subunit aASC95_17790Not AvailableNegative4415506 - 441816098138.6
hypothetical proteinASC95_17795Not AvailablePositive4418425 - 441908123315.5
3-demethylubiquinone-9 3-methyltransferaseASC95_17800Not AvailablePositive4419156 - 441986025591.9

Displaying genes 3851 – 3860 of 5805 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.