Rhizobium sp. Root1212

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Rhizobium

Description

Rhizobium sp. Root1212 is a rod-shaped bacterium that possesses flagella, allowing for motility. This organism has been characterized by a single replicon, indicating a streamlined genomic structure. It is cataloged under the accession number LMDA00000000.1, which provides a reference for its genetic information and sequencing data. As a member of the Rhizobium genus, Rhizobium sp. Root1212 is likely involved in symbiotic relationships with leguminous plants, facilitating nitrogen fixation. This ecological interaction is crucial, as it enhances soil fertility and promotes plant growth by converting atmospheric nitrogen into a form that plants can utilize. The presence of flagella may also suggest that Rhizobium sp. Root1212 can navigate toward plant roots, optimizing its symbiotic capabilities. In summary, the rod shape, flagellar motility, and genomic organization of Rhizobium sp. Root1212 suggest its adaptation for a specific ecological niche, where it plays a significant role in nitrogen cycling and plant health in its environment.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusRhizobium
SpeciesRhizobium sp. Root1212
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Rhizobium sp. Root1212
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhizobium sp. Root1212 contig_9, whole genome shotgun sequence.

Gene Summary

Adenine Count

1020826 bp

Thymine Count

1022216 bp

Guanine Count

1664345 bp

Cytosine Count

1637726 bp

Genome Length

5345260 bp

Protein-coding Genes

4792 genes

Non-Coding Genes

87 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
formate dehydrogenaseASC86_10170Q46507Positive3498418 - 349997454777.1
hypothetical proteinASC86_10175Not AvailablePositive3499971 - 35001867701.15
formate dehydrogenaseASC86_10180Q795Y4Positive3500238 - 3503117105641.0
formate dehydrogenase family accessory protein fdhdASC86_10185Q8UC79Positive3503121 - 350393928697.3
formate dehydrogenaseASC86_10190Not AvailablePositive3503929 - 35041839695.73
asnc family transcriptional regulatorASC86_10195Not AvailableNegative3504191 - 350462215660.2
saccharopine dehydrogenaseASC86_10200Q9AJC6Positive3504744 - 350584740073.1
mannose-1-phosphate guanyltransferaseASC86_10205P55357Negative3506186 - 350761351887.7
atp synthase f0f1 subunit epsilonASC86_10210Q8UC77Negative3507835 - 350824214758.6
atp synthase subunit betaASC86_10215Q92LK8Negative3508355 - 350986953220.6

Displaying genes 3251 – 3260 of 4879 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

290 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002583-(carbamoylamino)propanoateC4H7N2O3Chemical structure of 3-(carbamoylamino)propanoateNot available
Average131.112Da
Monoisotopic131.046215673Da
BASm0000275keto-D-sorboseC6H12O6Chemical structure of keto-D-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000315acetylpyruvateC5H6O4Chemical structure of acetylpyruvateNot available
Average130.099Da
Monoisotopic130.0266087Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da

Displaying 1–10 of 290 metabolites

Health Effects

No health effects information available for this bacterium.