Nocardioides sp. Soil796

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Propionibacteriales

Family

Nocardioidaceae

Genus

Nocardioides

Description

Nocardioides sp. Soil796 is characterized by having a single replicon, which is a notable trait for its genomic structure. This organism has been cataloged under the accession number LMSQ00000000.1. Nocardioides species are known for their role in soil environments, where they contribute to the degradation of complex organic materials, thus playing a critical role in nutrient cycling. The presence of Nocardioides sp. in the soil highlights its ecological importance. As a member of the Nocardioides genus, this strain is likely involved in the breakdown of organic pollutants and could contribute to bioremediation processes. The metabolic capabilities typical of Nocardioides species enable them to utilize a variety of substrates, which is beneficial in maintaining soil health and fertility. Understanding the traits of Nocardioides sp. Soil796, particularly its genomic simplicity with a single replicon, can provide insights into its adaptability and ecological functions. This trait may indicate a streamlined metabolic process, allowing the organism to efficiently exploit available resources in its environment. Overall, Nocardioides sp. Soil796 exemplifies the diverse functionalities of soil microbiota and their essential role in ecosystem dynamics.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderPropionibacteriales
FamilyNocardioidaceae
GenusNocardioides
SpeciesNocardioides sp. Soil796
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Nocardioides sp. Soil796 contig_9, whole genome shotgun sequence.

Gene Summary

Adenine Count

808520 bp

Thymine Count

805255 bp

Guanine Count

1835072 bp

Cytosine Count

1836228 bp

Genome Length

5288659 bp

Protein-coding Genes

4894 genes

Non-Coding Genes

51 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
cupinASH02_10285Not AvailableNegative2988824 - 298936019602.8
enamine deaminase ridaASH02_10290Not AvailableNegative2989422 - 298976912341.5
aldehyde dehydrogenaseASH02_10295Q8PPG7Negative2989766 - 299129253140.1
aspartate dehydrogenaseASH02_10300Q7VX83Negative2991402 - 299219927192.6
aldehyde oxidaseASH02_10305O32144Negative2992196 - 299454783793.6
(2fe-2s)-binding proteinASH02_10310P19921Negative2994544 - 299502917137.3
hypothetical proteinASH02_10315Not AvailableNegative2995026 - 299595232508.8
abc transporterASH02_10320Not AvailableNegative2995954 - 299675728783.7
abc transporterASH02_10325P75851Negative2996750 - 299759230648.0
nitrate abc transporter permeaseASH02_10330Q57856Negative2997625 - 299841327479.6

Displaying genes 2821 – 2830 of 4945 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

384 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da

Displaying 1–10 of 384 metabolites

Health Effects

No health effects information available for this bacterium.