Frigoribacterium sp. Leaf415

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Micrococcales

Family

Microbacteriaceae

Genus

Frigoribacterium

Description

Frigoribacterium sp. Leaf415 is characterized by possessing a single replicon, indicating a streamlined genetic structure that may contribute to its adaptability in specific environments. The organism is cataloged under the accession number LMQR00000000.1, which facilitates its identification and further study within microbial databases. While specific metabolic or ecological roles of Frigoribacterium sp. Leaf415 are not detailed in the provided data, the single replicon suggests a potential for efficient replication and maintenance of genetic material. This trait is often associated with bacteria that thrive in stable environments, as they may not require extensive genetic diversity for survival. The presence of Frigoribacterium sp. Leaf415 may indicate its role in a specific ecological niche, potentially contributing to nutrient cycling or other microbial interactions within its habitat. As a member of the broader Frigoribacterium genus, it may share traits with other species known for their cold-adapted capabilities, suggesting possible relevance in cold environments. In summary, the unique trait of having a single replicon may allow Frigoribacterium sp. Leaf415 to maintain a focused genetic framework, potentially enhancing its survival in its ecological niche. Further exploration of its characteristics could illuminate its functional role within its environment.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyMicrobacteriaceae
GenusFrigoribacterium
SpeciesFrigoribacterium sp. Leaf415
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Frigoribacterium sp. Leaf415 contig_4, whole genome shotgun

Gene Summary

Adenine Count

492147 bp

Thymine Count

490864 bp

Guanine Count

1215920 bp

Cytosine Count

1224192 bp

Genome Length

3423183 bp

Protein-coding Genes

2996 genes

Non-Coding Genes

51 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinASG28_00275Not AvailableNegative52342 - 5281216529.4
hypothetical proteinASG28_00280Not AvailableNegative52939 - 5368827075.6
short-chain dehydrogenaseASG28_00285Q9P7B4Negative53852 - 5453223753.0
xre family transcriptional regulatorASG28_00290Not AvailablePositive54635 - 5547730322.8
hypothetical proteinASG28_00295Q9K470Negative55515 - 5611121984.0
arsr family transcriptional regulatorASG28_00300O53838Positive56165 - 5651812832.3
cobalt transporterASG28_00305Not AvailablePositive56520 - 5756037131.9
sulfurtransferaseASG28_00310Not AvailableNegative57551 - 5785010400.6
hypothetical proteinASG28_00315Q9P6J2Negative57916 - 5864724157.0
hypothetical proteinASG28_00320Not AvailableNegative58651 - 5914817342.3

Displaying genes 51 – 60 of 3047 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

200 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0000542HgHgChemical structure of HgNot available
Average200.59Da
Monoisotopic201.9706256Da
BASm00006985-dehydro-2-deoxy-D-gluconateC6H9O6Chemical structure of 5-dehydro-2-deoxy-D-gluconateNot available
Average177.133Da
Monoisotopic177.04046159Da

Displaying 1–10 of 200 metabolites

Health Effects

No health effects information available for this bacterium.