Rhizobium sp. Leaf383

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Rhizobium

Description

Rhizobium sp. Leaf383 is characterized as a rod-shaped bacterium, which is notable for its presence of flagella, enabling motility. This trait facilitates its movement in soil environments, potentially enhancing its ability to colonize plant roots. The bacterium contains a single replicon, indicating a streamlined genomic structure that may contribute to its efficiency in symbiotic relationships. The accession number for Rhizobium sp. Leaf383 is LMQD00000000.1, which provides a reference for genetic and genomic information about this species. This genetic data can be crucial for understanding its functions and mechanisms, especially in relation to its symbiotic capabilities with leguminous plants. In ecological terms, Rhizobium species, including Leaf383, are known for their role in nitrogen fixation. By forming symbiotic relationships with legumes, they convert atmospheric nitrogen into a form usable by plants, thus enriching soil fertility. This process is vital for sustainable agricultural practices and ecosystem health, as it reduces the need for synthetic nitrogen fertilizers and promotes biodiversity through enhanced plant growth. The unique traits of Rhizobium sp. Leaf383, particularly its motility and genomic configuration, may provide insights into its efficiency and adaptability within its ecological niche.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusRhizobium
SpeciesRhizobium sp. Leaf383
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Rhizobium sp. Leaf383
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhizobium sp. Leaf383 contig_9, whole genome shotgun sequence.

Gene Summary

Adenine Count

932987 bp

Thymine Count

921955 bp

Guanine Count

1569714 bp

Cytosine Count

1589937 bp

Genome Length

5014728 bp

Protein-coding Genes

4272 genes

Non-Coding Genes

169 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
short-chain dehydrogenaseASG58_18800Not AvailableNegative1174064 - 117489129825.8
arac family transcriptional regulatorASG58_18805Not AvailablePositive1174983 - 117589433416.6
aspartate racemaseASG58_18810A0A0H3JGH6Negative1175939 - 117662825029.2
alcohol dehydrogenaseASG58_18815Not AvailableNegative1176680 - 117766336287.1
oxidoreductaseASG58_18820P39333Negative1177728 - 117848325465.7
mfs transporterASG58_18825P46105Negative1178612 - 118004249808.6
tetr family transcriptional regulatorASG58_18830Not AvailableNegative1180115 - 118064819808.2
hypothetical proteinASG58_18835Not AvailablePositive1180858 - 118124714595.7
hypothetical proteinASG58_18840Not AvailableNegative1181531 - 118234928854.5
phosphomethylpyrimidine synthaseASG58_18845Q2K206Negative1182648 - 118448966270.8

Displaying genes 1211 – 1220 of 4441 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

264 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000047sophoroseC12H22O11Chemical structure of sophoroseNot available
Average342.297Da
Monoisotopic342.116211528Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002583-(carbamoylamino)propanoateC4H7N2O3Chemical structure of 3-(carbamoylamino)propanoateNot available
Average131.112Da
Monoisotopic131.046215673Da
BASm00002654-formylbenzenesulfonateC7H5O4SChemical structure of 4-formylbenzenesulfonateNot available
Average185.17Da
Monoisotopic184.991403395Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000315acetylpyruvateC5H6O4Chemical structure of acetylpyruvateNot available
Average130.099Da
Monoisotopic130.0266087Da

Displaying 1–10 of 264 metabolites

Health Effects

No health effects information available for this bacterium.