Sphingomonas sp. Leaf339

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingomonadaceae

Genus

Sphingomonas

Description

Sphingomonas sp. Leaf339 is characterized as a rod-shaped bacterium, which is a defining trait of its morphology. The presence of flagella indicates that this species is motile, allowing it to navigate through its environment, potentially influencing its ecological interactions and nutrient acquisition strategies. The genomic structure of Sphingomonas sp. Leaf339 comprises a single replicon, which is typical for many bacteria and suggests a streamlined genetic organization. This attribute may facilitate efficient replication and stability of its genetic material, contributing to its adaptability in various environments. The accession number LMRS00000000.1 serves as a unique identifier for this strain, facilitating its classification and study within microbiological research. Accessions are crucial for tracking genetic information and understanding the phylogenetic relationships among different strains. Overall, the combination of its rod shape, motility via flagella, and genomic features may position Sphingomonas sp. Leaf339 as an important player in its ecological niche. Its ability to move and adapt may enhance its survival in diverse environments, potentially allowing it to thrive in various substrates or compete effectively for resources. This adaptability could indicate a role in biogeochemical cycles or in the degradation of organic materials, highlighting the ecological significance of Sphingomonas sp. Leaf339 within its habitat.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingomonadaceae
GenusSphingomonas
SpeciesSphingomonas sp. Leaf339
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Sphingomonas sp. Leaf339
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingomonas sp. Leaf339


Gene Summary

Adenine Count

690560 bp

Thymine Count

691231 bp

Guanine Count

1244084 bp

Cytosine Count

1285606 bp

Genome Length

3911581 bp

Protein-coding Genes

3470 genes

Non-Coding Genes

63 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
tail tape measure proteinASG67_09645Not AvailablePositive2476806 - 247735718386.1
Putative capsid and scaffold proteinASG67_09650Not AvailablePositive2477369 - 247965181445.5
Ncrna_class:rnase_p_rnaNot AvailableNot AvailablePositive1 - 362Not Available
16s ribosomal rnaNot AvailableNot AvailablePositive421 - 1915Not Available
Trna-ileNot AvailableNot AvailablePositive2146 - 2222Not Available
Trna-alaNot AvailableNot AvailablePositive2356 - 2431Not Available
23s ribosomal rnaNot AvailableNot AvailablePositive2811 - 5660Not Available
5s ribosomal rnaNot AvailableNot AvailablePositive5795 - 5909Not Available
Trna-metNot AvailableNot AvailablePositive6041 - 6117Not Available
Trna-metNot AvailableNot AvailablePositive6141 - 6217Not Available

Displaying genes 11 – 20 of 3533 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

253 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000122echinenoneC40H54OChemical structure of echinenoneNot available
Average550.871Da
Monoisotopic550.417466359Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da

Displaying 1–10 of 253 metabolites

Health Effects

No health effects information available for this bacterium.