Pseudorhodoferax sp. Leaf274

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Pseudorhodoferax

Description

Pseudorhodoferax sp. Leaf274 is characterized by having a single replicon, which indicates a relatively simple genomic structure. This trait may contribute to the organism's adaptability and metabolic efficiency in its environment. The genomic information for this strain is cataloged under the accession number LMNA00000000.1, which provides a reference point for researchers interested in studying its genetic and functional properties. As a member of the Pseudorhodoferax genus, this strain is likely to exhibit features typical of bacteria within this group, such as the ability to thrive in diverse ecological niches. While specific metabolic pathways or ecological roles for Pseudorhodoferax sp. Leaf274 are not detailed in the provided information, the presence of a single replicon may suggest streamlined processes that could be advantageous in specific environments. The streamlined genomic architecture may also facilitate rapid adaptation to changing conditions, highlighting an ecological insight into the potential resilience of Pseudorhodoferax sp. Leaf274 in its native habitat. Understanding these traits can aid in comprehending the ecological roles that this bacterium may play in its ecosystem, contributing to nutrient cycling or interactions with other microorganisms. Further study of its genomic and phenotypic characteristics could elucidate its functional capabilities and ecological significance.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusPseudorhodoferax
SpeciesPseudorhodoferax sp. Leaf274
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudorhodoferax sp. Leaf274 contig_9, whole genome shotgun

Gene Summary

Adenine Count

1020851 bp

Thymine Count

1020002 bp

Guanine Count

2348472 bp

Cytosine Count

2346348 bp

Genome Length

6735869 bp

Protein-coding Genes

5934 genes

Non-Coding Genes

125 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinASF44_22900Not AvailablePositive1536846 - 153744521915.3
hypothetical proteinASF44_22905Not AvailableNegative1537435 - 153802221003.1
polyisoprenoid-binding proteinASF44_22910Not AvailableNegative1538069 - 153862319427.7
cytochrome bASF44_22915P75925Negative1538650 - 153920720291.3
amino acid abc transporter atp-binding proteinASF44_22920P27675Negative1539342 - 154010928004.9
amino acid abc transporter permeaseASF44_22925Q52814Negative1540106 - 154083726761.5
abc transporter permeaseASF44_22930O34671Negative1540848 - 154154325106.0
amino acid abc transporter substrate-binding proteinASF44_22935P30859Negative1541607 - 154243429354.4
hypothetical proteinASF44_22940O53554Negative1542709 - 154425353972.8
lysr family transcriptional regulatorASF44_22945P77309Positive1544337 - 154522731724.5

Displaying genes 1481 – 1490 of 6059 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

435 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000234(3R)-hydroxybutanoate dimerC8H13O5Chemical structure of (3R)-hydroxybutanoate dimerNot available
Average189.188Da
Monoisotopic189.0768471Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002634-(hydroxymethyl)benzenesulfonateC7H7O4SChemical structure of 4-(hydroxymethyl)benzenesulfonateNot available
Average187.19Da
Monoisotopic187.007053459Da
BASm00002654-formylbenzenesulfonateC7H5O4SChemical structure of 4-formylbenzenesulfonateNot available
Average185.17Da
Monoisotopic184.991403395Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da

Displaying 1–10 of 435 metabolites

Health Effects

No health effects information available for this bacterium.