Sphingomonas sp. Leaf257

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingomonadaceae

Genus

Sphingomonas

Description

Sphingomonas sp. Leaf257 is a rod-shaped bacterium characterized by the presence of flagella, which suggests that it is motile. This trait may allow the organism to navigate its environment effectively, potentially influencing its ecological interactions and nutrient acquisition. The genome of Sphingomonas sp. Leaf257 contains a single replicon, indicating a streamlined genetic structure that may facilitate efficient replication and adaptation to various ecological niches. The accession number for this strain is LMMH00000000.1, which provides a reference for researchers interested in studying its genetic and functional attributes. The motility conferred by its flagella, combined with its genetic organization, may play a significant role in the bacterium's ecological dynamics. For instance, Sphingomonas species are known to inhabit diverse environments, including soil and aquatic systems, where they can contribute to the biodegradation of complex organic compounds. This ability to degrade pollutants may enhance nutrient cycling and promote ecosystem health. Overall, Sphingomonas sp. Leaf257's rod shape, flagella presence, and genomic characteristics position it as a potentially important player in its habitat, particularly in the context of bioremediation and nutrient cycling processes in various ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingomonadaceae
GenusSphingomonas
SpeciesSphingomonas sp. Leaf257
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Sphingomonas sp. Leaf257
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingomonas sp. Leaf257


Gene Summary

Adenine Count

760772 bp

Thymine Count

750703 bp

Guanine Count

1432104 bp

Cytosine Count

1470792 bp

Genome Length

4414563 bp

Protein-coding Genes

3932 genes

Non-Coding Genes

91 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Portal proteinASF14_02970Q1RIH4Negative595707 - 59681038718.6
AttrNot AvailableNot AvailablePositive610696 - 610708Not Available
AttlNot AvailableNot AvailablePositive618904 - 618915Not Available
Hk97 family major capsid proteinASF14_14680Not AvailableNegative621588 - 62290746651.5
Bacteriophage prohead proteaseASF14_14685Not AvailableNegative622921 - 62385031801.9
Hk97 family portal proteinASF14_14690Q9ZXB2Negative623847 - 62520249716.0
Gp79ASF14_14695Not AvailableNegative625205 - 62692963441.3
hypothetical proteinASF14_14700Not AvailableNegative626935 - 62730313224.9
Hnh endonucleaseASF14_14705Not AvailableNegative627493 - 62784914195.0
hypothetical proteinASF14_14710Not AvailableNegative628048 - 62850917425.0

Displaying genes 41 – 50 of 4023 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

235 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000305tetrathionateO6S4Chemical structure of tetrathionateNot available
Average224.24Da
Monoisotopic223.8588696Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da

Displaying 1–10 of 235 metabolites

Health Effects

No health effects information available for this bacterium.