Frigoribacterium sp. Leaf254

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Micrococcales

Family

Microbacteriaceae

Genus

Frigoribacterium

Description

Frigoribacterium sp. Leaf254 is characterized by having a single replicon, indicating a streamlined genomic structure that may contribute to its adaptability in specific environments. The strain is cataloged under the accession number LMMF00000000.1, which provides a reference for its genetic information and facilitates further research into its characteristics and potential applications. The categorization of Frigoribacterium sp. suggests that it may be part of a group of bacteria known for their cold-adapted properties, often thriving in environments with low temperatures. This adaptability could imply that Frigoribacterium sp. Leaf254 possesses unique enzymatic activities or metabolic pathways that enable it to function effectively under such conditions. In ecological terms, the presence of Frigoribacterium sp. Leaf254 in a given environment may play a significant role in nutrient cycling and organic matter decomposition, particularly in cold ecosystems. The ability of cold-adapted bacteria to degrade organic materials efficiently can influence the overall health and functioning of their habitats, potentially affecting plant growth and soil quality. Overall, Frigoribacterium sp. Leaf254 exemplifies the diversity of microbial life and its specialized adaptations, underscoring the importance of studying such microorganisms to understand their ecological roles and potential benefits to various biogeochemical processes.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyMicrobacteriaceae
GenusFrigoribacterium
SpeciesFrigoribacterium sp. Leaf254
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Frigoribacterium sp. Leaf254 contig_4, whole genome shotgun

Gene Summary

Adenine Count

493942 bp

Thymine Count

489360 bp

Guanine Count

1215766 bp

Cytosine Count

1224817 bp

Genome Length

3423974 bp

Protein-coding Genes

2994 genes

Non-Coding Genes

50 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
pyruvate kinaseASF07_05205P9WKE4Positive1137478 - 113892651299.4
hypothetical proteinASF07_05210Not AvailablePositive1139012 - 113963822118.0
cold-shock proteinASF07_05215O30875Negative1139763 - 11399667356.46
Trna-leuNot AvailableNot AvailablePositive1140280 - 1140365Not Available
transcriptional regulatorASF07_05225P9WGM2Positive1140405 - 114101022116.8
thioesteraseASF07_05230Q9KM09Negative1141072 - 114148214016.9
dna polymerase iASF07_05235P0A551Positive1141609 - 114428198007.5
d-beta-d-heptose 1-phosphate adenosyltransferaseASF07_05240O31713Positive1144655 - 114541627082.5
hypothetical proteinASF07_05245P42956Positive1145530 - 114672641079.1
pts lactose transporter subunit iibASF07_05250O65989Positive1146774 - 114708210575.0

Displaying genes 1001 – 1010 of 3044 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

196 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0000542HgHgChemical structure of HgNot available
Average200.59Da
Monoisotopic201.9706256Da
BASm00006985-dehydro-2-deoxy-D-gluconateC6H9O6Chemical structure of 5-dehydro-2-deoxy-D-gluconateNot available
Average177.133Da
Monoisotopic177.04046159Da

Displaying 1–10 of 196 metabolites

Health Effects

No health effects information available for this bacterium.