Agreia sp. Leaf244

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Micrococcales

Family

Microbacteriaceae

Genus

Agreia

Description

Agreia sp. Leaf244 is characterized by having a single replicon, indicating a streamlined genome structure. The genome is cataloged under the accession number LMLX00000000.1, which provides a reference point for further research and comparison within the context of microbial genomics. The significance of having a single replicon may relate to the organism's metabolic efficiency and adaptability in its ecological niche. In microbial systems, the number of replicons can influence gene regulation and replication dynamics, which can affect growth rates and responses to environmental changes. While specific ecological roles and interactions of Agreia sp. Leaf244 are not provided, the organism's genomic simplicity may suggest a specialization that allows it to thrive in particular habitats. This could implicate Agreia sp. Leaf244 in specific nutrient cycles or symbiotic relationships, potentially contributing to soil health or plant interactions, depending on its environmental context. In summary, the genomic structure of Agreia sp. Leaf244, defined by its single replicon and designated accession number, hints at potential ecological roles that warrant further investigation to understand its contributions to microbial ecosystems.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyMicrobacteriaceae
GenusAgreia
SpeciesAgreia sp. Leaf244
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Agreia sp. Leaf244 contig_9, whole genome shotgun sequence.

Gene Summary

Adenine Count

655122 bp

Thymine Count

655972 bp

Guanine Count

1349412 bp

Cytosine Count

1361843 bp

Genome Length

4022387 bp

Protein-coding Genes

3657 genes

Non-Coding Genes

50 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
phenylalanine--trna ligase subunit alphaASF06_17625Q6AGD7Negative3730429 - 373146937994.2
amino acid abc transporter permeaseASF06_17635Q8RQL5Negative3732404 - 373305123006.8
abc transporter substrate-binding proteinASF06_17640Q8RQL6Negative3733148 - 373401730757.1
glutamate abc transporter atp-binding proteinASF06_17645P48243Negative3734064 - 373487929424.6
rna methyltransferaseASF06_17650P94538Negative3734979 - 373578828304.6
50s ribosomal protein l20ASF06_17655A5CSJ9Negative3735834 - 373622014452.5
50s ribosomal protein l35ASF06_17660B0RHC1Negative3736254 - 37364487144.06
translation initiation factor 3ASF06_17665O88060Negative3736485 - 373705120692.6
atpaseASF06_17670Not AvailablePositive3737481 - 373782811972.1
hypothetical proteinASF06_17675Not AvailableNegative3737838 - 373862928295.5

Displaying genes 3441 – 3450 of 3707 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

235 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm0000275keto-D-sorboseC6H12O6Chemical structure of keto-D-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0000542HgHgChemical structure of HgNot available
Average200.59Da
Monoisotopic201.9706256Da

Displaying 1–10 of 235 metabolites

Health Effects

No health effects information available for this bacterium.