Sphingomonas sp. Leaf231

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingomonadaceae

Genus

Sphingomonas

Description

Sphingomonas sp. Leaf231 is a rod-shaped bacterium characterized by the presence of flagella, which suggests it possesses motility. This trait is significant for its ability to navigate through various environments, potentially aiding in its ecological interactions and survival strategies. The organism has a single replicon, indicating a streamlined genetic structure that may facilitate efficient replication and adaptation processes. The accession number LMLS00000000.1 provides a reference for genetic information related to Sphingomonas sp. Leaf231, allowing for further studies and comparisons within the Sphingomonas genus and related taxa. Understanding the genetic make-up of this bacterium can provide insights into its functional capabilities and ecological roles. Ecologically, Sphingomonas species are known to be involved in the degradation of complex organic compounds, which can be essential in nutrient cycling within their environments. Their motility, combined with their potential for biodegradation, may position Sphingomonas sp. Leaf231 as a significant player in the decomposition processes of organic matter, thus contributing to the maintenance of ecosystem balance and health.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingomonadaceae
GenusSphingomonas
SpeciesSphingomonas sp. Leaf231
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Sphingomonas sp. Leaf231
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingomonas sp. Leaf231 contig_8, whole genome shotgun sequence.

Gene Summary

Adenine Count

615634 bp

Thymine Count

615522 bp

Guanine Count

1249006 bp

Cytosine Count

1253012 bp

Genome Length

3733197 bp

Protein-coding Genes

3314 genes

Non-Coding Genes

61 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
dna polymeraseASE95_00110P28631Negative18986 - 1997534295.3
thymidylate kinaseASE95_00115A5V3I6Negative19972 - 2060122004.0
peptidase s11ASE95_00120P44466Negative20616 - 2179141591.1
lytic transglycosylaseASE95_00125P41052Negative21869 - 2291237619.7
Trna-serNot AvailableNot AvailablePositive23047 - 23136Not Available
hypothetical proteinASE95_00135Not AvailableNegative23203 - 2352611761.4
50s ribosomal protein l31ASE95_00140Q1GRR1Negative23575 - 238058419.1
3-hydroxyacyl-acp dehydrataseASE95_00145A5V3H2Negative23910 - 2433515087.7
outer membrane family proteinASE95_00150Not AvailableNegative24395 - 2505422380.4
outer membrane protein assembly factor bamaASE95_00155C6V5K2Negative25054 - 2762495550.6

Displaying genes 31 – 40 of 3375 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

222 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da

Displaying 1–10 of 222 metabolites

Health Effects

No health effects information available for this bacterium.