Sphingomonas sp. Leaf198

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingomonadaceae

Genus

Sphingomonas

Description

Sphingomonas sp. Leaf198 is characterized by its rod-shaped morphology and the presence of flagella, which suggests it may exhibit motility in its environment. This motility could enhance its ability to colonize various ecological niches. The organism has a single replicon, indicating a streamlined genomic structure that may facilitate efficient replication and adaptation. The accession number LMPX00000000.1 provides a reference for the genomic data associated with Sphingomonas sp. Leaf198, making it accessible for further research and analysis. Biologically, Sphingomonas species are known for their versatile metabolic capabilities, often playing a role in the degradation of complex organic compounds. This trait positions Sphingomonas sp. Leaf198 as potentially significant in bioremediation processes, particularly in environments contaminated with organic pollutants. Its motility, coupled with its metabolic versatility, suggests that it may effectively navigate and thrive in various ecological settings, contributing to nutrient cycling and ecosystem health.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingomonadaceae
GenusSphingomonas
SpeciesSphingomonas sp. Leaf198
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Sphingomonas sp. Leaf198
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingomonas sp. Leaf198 contig_7, whole genome shotgun sequence.

Gene Summary

Adenine Count

723024 bp

Thymine Count

720964 bp

Guanine Count

1369837 bp

Cytosine Count

1387974 bp

Genome Length

4201813 bp

Protein-coding Genes

3631 genes

Non-Coding Genes

58 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinASG20_00165Q8P3K1Positive36668 - 3701212939.3
fucose permeaseASG20_00170P11551Positive37217 - 3851845522.1
nad(p)-dependent oxidoreductaseASG20_00175Q8P3K4Positive38532 - 3926324719.7
alpha-hydroxy-acid oxidizing enzymeASG20_00180Q9A943Positive39271 - 4041941143.9
2-hydroxyhepta-2,4-diene-1,7-dioate isomeraseASG20_00185A9ALD1Positive40416 - 4127030855.7
amidohydrolaseASG20_00190Not AvailablePositive41272 - 4215032173.0
pyridoxal 4-dehydrogenaseASG20_00195Q52472Positive42147 - 4318136424.4
altronate hydrolaseASG20_00200P42604Positive43178 - 4347710437.6
hydrolaseASG20_00205Not AvailablePositive43549 - 4473641132.3
multidrug abc transporter atp-binding proteinASG20_00210P36879Negative44738 - 4566133323.3

Displaying genes 41 – 50 of 3689 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

266 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000122echinenoneC40H54OChemical structure of echinenoneNot available
Average550.871Da
Monoisotopic550.417466359Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da

Displaying 1–10 of 266 metabolites

Health Effects

No health effects information available for this bacterium.